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Intel-HLS
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GenomicsDB
GenomicsDB
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Bug fix
#178
kgururaj
closed
6 years ago
0
AEJ-271: GenomicsDBImport refactoring #5 - JNI Class
#177
francares
closed
6 years ago
0
AEJ-271: GenomicsDBImport refactoring #4 - Packages
#176
francares
closed
6 years ago
0
AEJ-271: GenomicsDBImport refactoring #3 - Extensions
#175
francares
closed
6 years ago
1
AEJ-271: GenomicsDBImport refactoring #2 - BaseImportConfig
#174
francares
closed
6 years ago
0
First iteration on GenomicsDBImporter refactoring
#173
francares
closed
6 years ago
0
Pass through query JSON (backward compatibility)
#172
kgururaj
closed
6 years ago
2
Multiple random genotypes generated if GT is last field in vid_mapping.json fields section for GenomicsDB 0.9.0 vcf2tiledb
#171
wrighth-omics
closed
6 years ago
5
AEJ-275: Move protobuf output structures to com.intel.genomicsdb.model
#170
francares
closed
6 years ago
0
Optimization for site-only query
#169
kgururaj
closed
6 years ago
0
GenomicsDBImporter Protobuf API
#168
psfoley
closed
6 years ago
1
build difficulties, docker error
#167
jpdna
opened
6 years ago
1
Sites only query
#166
kgururaj
closed
6 years ago
1
AEJ-205: Implemented first iteration on chromosome intervals parallel…
#165
francares
closed
6 years ago
5
AEJ-204: Improved way of working with Java artifacts.
#164
francares
closed
6 years ago
1
AEJ-203: Adding support for compiling with MacOS Sierra and High Sierra.
#163
francares
closed
6 years ago
0
GenomicsDB changes for HDFS
#162
datma-health
closed
6 years ago
2
Called GTs are poorly formatted and sometimes inaccurate
#161
ldgauthier
closed
6 years ago
7
Performance regression fix in columnar iterator after code restructuring
#160
kgururaj
closed
6 years ago
0
Bug fix - resize LUTs when dealing with spanning deletions
#159
kgururaj
closed
6 years ago
0
propagate underlying exception in GenomicsDBImporter.java on failure to load
#158
lbergelson
closed
6 years ago
1
BCF2 workaround
#157
kgururaj
closed
6 years ago
1
Bug fix in TileDB array delete
#156
kgururaj
closed
6 years ago
0
Fixes for cross-compilation
#155
kgururaj
closed
6 years ago
0
Minor fixes in TileDB to handle PRIu64 in C++ for some compiler versions
#154
kgururaj
closed
6 years ago
1
Allele specific annotation support
#153
kgururaj
closed
6 years ago
0
Upgrade version to 0.8.0
#152
psfoley
closed
6 years ago
0
GATK 4: Full VCF Header Support
#151
psfoley
closed
6 years ago
0
Bug fix
#150
kgururaj
closed
6 years ago
0
Update to TileDB master
#149
kgururaj
closed
6 years ago
1
No Sample Line
#148
aardes
closed
6 years ago
8
DON'T MERGE: Update tiledb latest
#147
kdatta
closed
6 years ago
1
DB-229
#146
psfoley
closed
6 years ago
0
changes for spark locality
#145
mlathara
closed
6 years ago
0
Upgrade version to 0.7.0
#144
kgururaj
closed
7 years ago
0
Produce FILTER in combined VCF records -
#143
kgururaj
closed
7 years ago
0
Segfault when working with VCF with multiple contigs
#142
jackgoldsmith4
closed
6 years ago
3
Update README.md
#141
danking
closed
7 years ago
0
Non-diploid and phased genotype data
#140
kgururaj
closed
7 years ago
0
Spark core 2.11
#139
kdatta
closed
7 years ago
0
Default combination operation for DP INFO field produces different value
#138
jackgoldsmith4
closed
7 years ago
1
reference genome file in query.json
#137
jackgoldsmith4
closed
7 years ago
2
Correct combination operation for length "A" fields?
#136
jackgoldsmith4
closed
5 years ago
5
Help with a Simple Query
#135
danking
closed
7 years ago
4
Follow up from issue #123
#134
kgururaj
closed
7 years ago
0
Another segfault when importing VCF
#133
chenxiang1028
closed
6 years ago
4
Corner case bug fix
#132
kgururaj
closed
7 years ago
1
Changes in htslib
#131
kgururaj
closed
7 years ago
0
Cannot find GenomicsDB maven package that supports spark-core_2.11
#130
jackgoldsmith4
closed
7 years ago
2
Two extra zeroes added onto DP INFO field
#129
jackgoldsmith4
closed
7 years ago
6
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