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JBerthelier
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PiRATE
PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)
http://doi.org/10.17882/51795
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Slow download speed for PiRATE-VM file
#58
yweii
opened
6 months ago
0
PASTEC error
#57
adriludwig
opened
3 years ago
0
TEannot Output
#56
KHANYAP4
opened
4 years ago
1
MCL
#55
Lukanyo12
closed
4 years ago
2
TEs classified as potential chimeric
#54
Lukanyo12
opened
4 years ago
4
error in PASTEC
#53
adriludwig
closed
4 years ago
8
PASTEC Classification
#52
Lukanyo12
closed
4 years ago
1
HHH
#51
Lukanyo12
closed
4 years ago
1
TE content (%)
#50
Lukanyo12
closed
4 years ago
3
Statistics summary
#49
pwkooij
closed
4 years ago
3
Encountered error in Hmmer
#48
Lukanyo12
opened
4 years ago
2
Script for eliminating redudancy in CD-Hit est
#47
Lukanyo12
closed
4 years ago
1
TEannot query
#46
pwkooij
closed
4 years ago
3
Run PiRATE without using Illumina raw data
#45
Lukanyo12
closed
4 years ago
1
RepeatMasker encountered a line in an unrecognized format.
#44
vtrinca
opened
4 years ago
1
Progress with Docker version
#43
brettChapman
opened
4 years ago
4
Single Transposable elements library
#42
Lukanyo12
closed
4 years ago
2
RNA-seq data analysis
#41
Lukanyo12
closed
4 years ago
1
PiRATE DEFAULT DATABANKS
#40
Lukanyo12
closed
4 years ago
2
Weight below or more than 1 GO
#39
Lukanyo12
closed
4 years ago
1
PiRATE pipeline.
#38
Lukanyo12
closed
4 years ago
4
Does it necessary to have an assembled genome to run PiRATE pipeline
#37
majie5976
closed
4 years ago
2
Does it necessary to have an assembled genome to run PiRATE
#36
majie5976
closed
4 years ago
1
Unable to upload data from my Local PC.
#35
majie5976
closed
4 years ago
2
How to upload huge data on the virtual computer to galaxy via FTP?
#34
liulu0827
closed
4 years ago
1
No internet connection
#33
JDepot
closed
4 years ago
5
TEdenovo error with 60bp file
#32
pwkooij
opened
4 years ago
11
Error with Helsearch
#31
pwkooij
closed
4 years ago
2
TEdenovo error
#30
pwkooij
closed
4 years ago
1
How to set up the number of processor and slots for the tools TEdenovo, PASTEC and TEannot (REPET package) in PiRATE
#29
JBerthelier
opened
4 years ago
0
How to connect via FTP on tne Virtual Machine to transfert my data
#28
JBerthelier
opened
4 years ago
1
FASTQ to FASTA error
#27
pwkooij
closed
4 years ago
2
long read sequence data
#26
pwkooij
opened
4 years ago
1
_mysql_exceptions.DatabaseError: ERROR: failed to connect to the MySQL database
#25
wangj2009
closed
4 years ago
1
Are the Galaxy tools available on a Toolshed or others ?
#24
yvanlebras
closed
3 years ago
3
FTP is not available
#23
molecularwonder
closed
4 years ago
0
How to interpret the output of PASTEC in PiRATE
#22
wangj2009
closed
4 years ago
1
Install PiRATE
#21
Kyungkim-lab
closed
4 years ago
1
PiRATE-VM
#20
molecularwonder
closed
4 years ago
1
use docker to make it more robust?
#19
444thLiao
closed
4 years ago
4
TEannot - size genome
#18
adriludwig
closed
4 years ago
2
transferring data to vm
#17
rob123king
closed
4 years ago
1
french keyboard in shell
#16
rob123king
opened
5 years ago
1
resize virtual hard disk
#15
jazberna1
closed
5 years ago
2
how to freely copy/move file between PiRATE and Ubutu?
#14
wangj2009
closed
4 years ago
1
Usage without VM
#13
timeu
opened
5 years ago
1
GFF output from TE annotation
#12
lyy005
closed
5 years ago
2
Problem with TEannot
#11
ayala-usma
closed
4 years ago
3
Query regarding construction of libraries for annotation
#10
jphruska
closed
4 years ago
5
root password for the VM
#9
juancresc
closed
5 years ago
1
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