JULIELab trec-pm issues

JULIELab / trec-pm

Support code and resources for participation at the TREC Precision Medicine Track (TREC-PM)

http://trec-cds.appspot.com

MIT License

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

TrecMetricsCreator could receive a GS object

#67 michelole opened 5 years ago
1
Refactor `Experiment`

#66 michelole closed 5 years ago
1
Issue 53

#65 michelole closed 5 years ago
0
Unify boost and keyword templates

#64 michelole opened 5 years ago
0
Calculate best, median, and worst metrics automatically for R plots

#63 michelole closed 5 years ago
0
Issue 9

#62 michelole closed 5 years ago
0
Return a traditional document list in `getQrelDocuments`

#61 michelole closed 5 years ago
0
RankLib may not like unjudged documents

#60 michelole closed 5 years ago
0
Introduce `GoldStandardFactory`

#59 michelole closed 5 years ago
1
Make gold standards encapsulate a single, in-memory, data model

#58 michelole closed 5 years ago
0
Make `Topic` do not depend on `Task`

#57 michelole closed 5 years ago
0
`Retrieval` should get an index directly

#56 michelole closed 5 years ago
0
Migrate code to ES 7

#55 michelole closed 5 years ago
3
Helper class

#54 michelole opened 5 years ago
0
Remove `ExperimentBuilder`

#53 michelole closed 5 years ago
0
Manual terminology

#52 michelole closed 5 years ago
0
`Experiment` should not depend on `Task`

#51 michelole closed 5 years ago
4
`Retrieval` should not depend on year

#50 michelole closed 5 years ago
1
Issue 29

#49 michelole closed 5 years ago
2
It's not only about cancer

#48 michelole closed 5 years ago
2
Plot recall per topic

#47 michelole opened 5 years ago
1
Stopword removal

#46 michelole closed 5 years ago
0
Umls relations

#45 khituras closed 5 years ago
7
Learning to Rank

#44 michelole opened 5 years ago
0
Custom evaluation code for treatment_recall@N

#43 michelole opened 5 years ago
1
Customize `TrecWriter` with treatments

#42 michelole closed 5 years ago
0
Retrieve treatment information for docs

#41 michelole closed 5 years ago
0
Fine tune BM25 parameters

#40 michelole opened 5 years ago
0
Different ranking algorithms

#39 michelole opened 5 years ago
0
Update `umlsSynsets.txt` MD5

#38 michelole closed 5 years ago
4
Issue 26

#37 michelole closed 5 years ago
0
Umls format change

#36 khituras closed 5 years ago
3
Different weights for "solid tumors" and disease hypernyms

#35 michelole closed 5 years ago
0
Allow a variable number of results (fixes #32)

#34 michelole closed 5 years ago
0
Minor improvements

#33 michelole opened 5 years ago
0
Variable number of results

#32 michelole closed 5 years ago
0
Unify `ResultList` and `DocumentList`

#31 michelole opened 5 years ago
1
Relevance Feedback

#30 michelole opened 5 years ago
2
Experiment Registry

#29 michelole closed 5 years ago
0
Baseline Treatment Ranking

#28 michelole closed 5 years ago
4
New version of 2018 gold standard

#27 michelole closed 5 years ago
0
Automate gold standard upload

#26 michelole closed 5 years ago
0
Issue 8

#25 michelole closed 5 years ago
0
`AtomicGoldStandard` should encapsulate a single file

#24 michelole closed 5 years ago
5
`TopicSet` and `Topic` should not depend on `Task`

#23 michelole closed 5 years ago
11
Evaluate boosting AACR/ASCO papers

#22 michelole opened 5 years ago
1
PM Classifier for CT

#21 michelole opened 5 years ago
1
Issue 18

#20 michelole closed 5 years ago
8
UMLS disease hypernyms

#19 michelole closed 5 years ago
5
Add "inverse" methods to `AtomicGoldStandard`

#18 michelole closed 5 years ago
0

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