JonnyTran OpenOmics issues

JonnyTran / OpenOmics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

https://openomics.readthedocs.io/en/latest/

MIT License

31 stars 13 forks source link

issues

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[Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

#203 JonnyTran opened 2 weeks ago
0
[Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

#202 JonnyTran opened 2 weeks ago
0
[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

#201 JonnyTran opened 1 month ago
0
[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

#200 JonnyTran opened 1 month ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.4.1

#199 JonnyTran opened 1 month ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.4.1

#198 JonnyTran opened 1 month ago
0
[Snyk] Security upgrade requests from 2.31.0 to 2.32.0

#197 JonnyTran opened 2 months ago
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[Snyk] Security upgrade requests from 2.31.0 to 2.32.0

#196 JonnyTran opened 2 months ago
0
[Snyk] Security upgrade werkzeug from 2.2.3 to 3.0.3

#195 JonnyTran opened 2 months ago
0
The Creating biological interaction networks file is empty

#194 Rana-Sabrii opened 3 months ago
0
[Snyk] Security upgrade pillow from 9.5.0 to 10.3.0

#193 JonnyTran opened 3 months ago
0
[Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

#192 JonnyTran opened 5 months ago
0
[Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

#191 JonnyTran opened 5 months ago
0
[Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

#190 JonnyTran opened 6 months ago
0
Request: making OMIM integration

#189 jamesbraza opened 6 months ago
0
Bug: MalaCards integration not working because CSV is not working

#188 jamesbraza opened 6 months ago
1
[Snyk] Security upgrade fonttools from 4.38.0 to 4.43.0

#187 JonnyTran opened 7 months ago
0
[Snyk] Fix for 3 vulnerabilities

#186 JonnyTran opened 8 months ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.3

#185 JonnyTran closed 2 months ago
0
[Snyk] Security upgrade werkzeug from 2.2.3 to 3.0.1

#184 JonnyTran opened 9 months ago
0
[Snyk] Security upgrade pillow from 9.5.0 to 10.0.1

#183 JonnyTran opened 10 months ago
0
[Snyk] Security upgrade gevent from 22.10.2 to 23.9.0

#182 JonnyTran closed 10 months ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.3

#181 JonnyTran closed 10 months ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.3

#180 JonnyTran closed 10 months ago
0
[Snyk] Security upgrade setuptools from 39.0.1 to 65.5.1

#179 JonnyTran closed 10 months ago
0
[Snyk] Security upgrade flask from 2.2.3 to 2.2.5

#178 snyk-bot closed 1 year ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.2

#177 snyk-bot closed 1 year ago
0
Added functionality to write uncompressed files for faster loads

#176 JonnyTran closed 1 year ago
0
Fix error on init: KeyError when 'database' key does not exist, logger msg fmt

#175 t-silvers closed 1 year ago
1
[Snyk] Security upgrade tornado from 6.2 to 6.3.2

#174 JonnyTran closed 1 year ago
0
[Snyk] Security upgrade tornado from 6.2 to 6.3.2

#173 JonnyTran closed 1 year ago
0
Codecov & PyPI push to GH Actions

#172 JonnyTran closed 1 year ago
0
removed numpy version requirement

#171 JonnyTran closed 1 year ago
0
remove Python 3.10 from to github actions

#170 JonnyTran closed 1 year ago
0
Upgraded to pyproject.toml

#169 JonnyTran closed 1 year ago
0
Test Suite Errors

#168 sdhutchins opened 1 year ago
1
Fixed importing errors in tests.

#167 sdhutchins closed 1 year ago
5
Fix flake8 linting error.

#166 sdhutchins closed 1 year ago
0
Unable to use load_data() for class Multiomics

#165 piyushm27 opened 2 years ago
4
Minor tweaks to paper.

#164 arfon closed 3 years ago
0
Reviewer 1 - Installation

#161 ksielemann closed 3 years ago
2
Reviewer 1 - errors using the example code

#160 ksielemann closed 3 years ago
1
Reviewer 1 - Documentation

#159 ksielemann closed 3 years ago
6
Format code with black and yapf

#158 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#157 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#156 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#155 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#154 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#153 deepsource-autofix[bot] closed 3 years ago
0
Format code with black and yapf

#152 deepsource-autofix[bot] closed 3 years ago
0