Kappa-Dev KappaTools issues

Kappa-Dev / KappaTools

Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at

http://kappalanguage.org/

GNU Lesser General Public License v3.0

113 stars 41 forks source link

issues

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Mods with Tokens

#607 rkruegs123 closed 4 years ago
3
GUI double-prints CM bonds into SVG, with black fill

#606 hmedina opened 5 years ago
2
contact map could highlight bonds KaSa knows engage in polymerization

#605 hmedina opened 5 years ago
0
Building initial state (n agents) is supposed to mean what?

#604 hmedina closed 5 years ago
0
Update render-contactmap.js

#603 hmedina closed 5 years ago
0
Contact map interactive mode doesn't allow hilighting self-loops

#602 hmedina opened 5 years ago
0
documentation: manual doesn't describe trace format

#601 yarden opened 5 years ago
4
feature wish/discussion: having complex size as observable

#600 yarden opened 5 years ago
2
Feature request: trace compression

#599 hmedina opened 5 years ago
7
feature request: generating JSON snapshots in compressed format (like gzip)

#598 yarden opened 5 years ago
2
installation error about Stdlib.Pervasives

#597 yarden closed 5 years ago
2
Fixing inefficiency in Kappa IO with kappy

#596 yarden closed 5 years ago
1
manual bug: "[mod]", not "mod", for modulo

#595 yarden closed 4 years ago
3
"are you sure you want to leave this page?"

#594 hmedina opened 5 years ago
0
outputting snapshots in JSON format with KaSim

#593 yarden closed 5 years ago
5
Unexpected positive self-influence in DIN with explicit unary rates

#592 slegare2 opened 5 years ago
4
ocamlgraph / parsing and analysis of snapshots

#591 nilsbecker closed 5 years ago
11
how to debug reactions

#590 nilsbecker closed 5 years ago
4
useless ambiguity warning may be incorrect

#589 nilsbecker opened 5 years ago
3
vim editor support

#588 nilsbecker opened 5 years ago
3
Influence map at level Realisable raises exception (Direct doesn't)

#587 pirbo closed 5 years ago
6
Toplevel syntax for repeat perturbations?

#586 hmedina closed 5 years ago
2
snapshot at particular time with kappy

#585 yarden closed 5 years ago
0
possibly incorrect deadlock

#584 nilsbecker closed 5 years ago
16
Kappy stores snapshots as "snapshot.ka" since ~v4.0.92

#583 Zulko closed 5 years ago
0
More functions to the toplevel

#582 hmedina opened 5 years ago
1
gracefully handle case when binaries not found (in Py3 compatible way); add nose as dependency

#581 yarden closed 5 years ago
0
Exported snapshots in SVG have invisible bonds; lack 'stroke' field

#580 hmedina closed 5 years ago
1
Problematic error location

#579 jkrivine closed 5 years ago
1
allow users to provide alternative binary dir so that kappy can be build without binaries

#578 yarden closed 5 years ago
1
duplication of complexes

#577 nilsbecker closed 5 years ago
15
pattern variables

#576 nilsbecker closed 5 years ago
2
documentation for binary releases?

#575 yarden closed 5 years ago
1
New kappy installation errors

#574 bgyori closed 5 years ago
8
GUI editor resets cursor to 0,0 and removes text

#573 hmedina opened 5 years ago
1
alarm + variables = incorrect beginning of sentence

#572 hmedina closed 5 years ago
1
Fix PR #570

#571 yvan-sraka closed 5 years ago
0
Fix issue #568: Paste (Ctrl-v) does not work in the Kappapp

#570 yvan-sraka closed 5 years ago
0
Fix issue #567: Comment nesting in GUI

#569 yvan-sraka closed 5 years ago
0
Paste (Ctrl-v) does not work in the Kappapp

#568 pirbo closed 5 years ago
4
Comment nesting in GUI

#567 hmedina closed 5 years ago
4
Create an EditorConfig (editorconfig.org) file

#566 yvan-sraka closed 5 years ago
2
Add a Travis CI (travis-ci.org) build status badge to README.md

#565 yvan-sraka closed 5 years ago
0
Snapshot cannot be visualized on tablets

#564 jkrivine closed 5 years ago
5
Zero activity, all rules dead, no events, never-ending simulation

#563 hmedina closed 5 years ago
0
Inconsistent evaluation order of variables from command line

#562 hmedina closed 5 years ago
0
Weird result for influence map

#561 bgyori closed 5 years ago
2
Archive file, illegal Kappa, counters, weird kinetics

#560 hmedina opened 5 years ago
3
Bug with self loops

#559 slegare2 closed 5 years ago
5
KaStor feature request, flag unimolecular rules

#558 slegare2 closed 5 years ago
9

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