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KennethEnevoldsen
/
snip
A utility package handling Single Nucleotide polymorphism data in Python
https://kennethenevoldsen.github.io/snip/
MIT License
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Consult snp embedding
#62
Cherished-l
opened
1 year ago
2
[pre-commit.ci] pre-commit autoupdate
#61
pre-commit-ci[bot]
opened
1 year ago
0
Fix issue w. dataset conversion
#60
KennethEnevoldsen
opened
1 year ago
1
to learn: fine mapping
#59
KennethEnevoldsen
opened
1 year ago
0
calculate reconstruction loss
#58
KennethEnevoldsen
opened
1 year ago
0
try doing PyTorch models in parallel
#57
KennethEnevoldsen
opened
1 year ago
0
calculate heritability on chrom 22
#56
KennethEnevoldsen
opened
1 year ago
1
create linear and non-linear compression of chrom 22
#55
KennethEnevoldsen
opened
1 year ago
0
Num workers for data loaders must be 1 otherwise it duplicates data
#54
KennethEnevoldsen
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#53
pre-commit-ci[bot]
closed
1 year ago
0
Added sklearn MLP for faster model iteration
#52
KennethEnevoldsen
closed
1 year ago
0
:arrow_up: Bump pyzmq from 23.2.1 to 24.0.0
#51
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump ipython from 8.4.0 to 8.5.0
#50
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump sentry-sdk from 1.9.7 to 1.9.8
#49
dependabot[bot]
closed
2 years ago
1
:arrow_up: Update setuptools requirement from 59.5.0 to 65.3.0
#48
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump nbformat from 5.4.0 to 5.5.0
#47
dependabot[bot]
closed
2 years ago
1
fix NAN issue
#46
KennethEnevoldsen
opened
2 years ago
0
fix nan-loss
#45
KennethEnevoldsen
opened
2 years ago
0
(auto)-estimate ideal batch size
#44
KennethEnevoldsen
opened
2 years ago
0
Implement slided MLP
#43
KennethEnevoldsen
closed
2 years ago
0
:arrow_up: Update black requirement from >=22.3.0,<22.4.0 to >=22.3.0,<22.9.0
#42
dependabot[bot]
closed
2 years ago
0
:arrow_up: Update types-setuptools requirement from >=62.6.1,<62.7.0 to >=62.6.1,<65.4.0
#41
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump actions/cache from 2.1.6 to 3.0.8
#40
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump MishaKav/pytest-coverage-comment from 1.1.29 to 1.1.33
#39
dependabot[bot]
closed
2 years ago
1
add functionality to continue training
#38
KennethEnevoldsen
opened
2 years ago
0
Test dataset split
#37
KennethEnevoldsen
closed
2 years ago
0
Apply slided MLP ukbb (expected time: runtime 29th)
#36
KennethEnevoldsen
opened
2 years ago
0
If relevant optimize slided MLP to run faster (expected time: unknown, due 27th)
#35
KennethEnevoldsen
opened
2 years ago
0
Apply slided MLP in a small set (expected time >1 day, due 24th)
#34
KennethEnevoldsen
closed
2 years ago
0
:arrow_up: Update pre-commit requirement from >=2.19.0,<2.20.0 to >=2.19.0,<2.21.0
#33
dependabot[bot]
closed
2 years ago
0
:arrow_up: Update wandb requirement from ^0.12.21 to ^0.13.2
#32
dependabot[bot]
closed
2 years ago
1
:arrow_up: Update types-setuptools requirement from ^62.6.1 to ^65.1.0
#31
dependabot[bot]
closed
2 years ago
1
Impute on train and apply to test
#30
KennethEnevoldsen
closed
2 years ago
0
Implement Slided MLP (with linear activations corresponding to a PCA) (expected time 1-3, due 24th)
#29
KennethEnevoldsen
closed
2 years ago
0
Adds imputation
#28
KennethEnevoldsen
closed
2 years ago
1
New plan
#27
KennethEnevoldsen
opened
2 years ago
0
Feat: Add train test split
#26
KennethEnevoldsen
closed
2 years ago
1
:arrow_up: Bump actions/cache from 2.1.6 to 3.0.7
#25
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump MishaKav/pytest-coverage-comment from 1.1.29 to 1.1.32
#24
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump MishaKav/pytest-coverage-comment from 1.1.29 to 1.1.31
#23
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump MishaKav/pytest-coverage-comment from 1.1.29 to 1.1.30
#22
dependabot[bot]
closed
2 years ago
1
:arrow_up: Bump actions/cache from 2.1.6 to 3.0.6
#21
dependabot[bot]
closed
2 years ago
1
:arrow_up: Update zarr requirement from >=2.11.0,<2.12.0 to >=2.11.0,<2.13.0
#20
dependabot[bot]
closed
2 years ago
1
:arrow_up: Update types-setuptools requirement from ^62.6.1 to ^63.2.2
#19
dependabot[bot]
closed
2 years ago
2
:arrow_up: Update pre-commit requirement from >=2.19.0,<2.19.1 to >=2.19.0,<2.20.1
#18
dependabot[bot]
closed
2 years ago
0
:arrow_up: Update flake8 requirement from >=4.0.1,<4.1.0 to >=4.0.1,<5.1.0
#17
dependabot[bot]
closed
2 years ago
0
:arrow_up: Update torch requirement from >=1.10.2,<1.11.0 to >=1.10.2,<1.13.0
#16
dependabot[bot]
closed
2 years ago
0
:arrow_up: Update mypy requirement from ^0.961 to ^0.971
#15
dependabot[bot]
closed
2 years ago
0
test: Added tests for dataloaders
#14
KennethEnevoldsen
closed
2 years ago
1
Add test to dataloaders
#13
KennethEnevoldsen
closed
2 years ago
1
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