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KlausVigo
/
phangorn
Phylogenetic analysis in R
http://klausvigo.github.io/phangorn/
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install phangorn in R 3.6?
#124
marwa38
closed
2 years ago
2
modelTest in batch mode
#123
LIEHUZUO123
closed
2 years ago
1
modelTest for tree with >100 tips
#122
dferran1
closed
2 years ago
3
Update phylo.R
#121
thijsjanzen
closed
3 years ago
1
Pratchet duplicates tips
#120
kbhoehn
closed
3 years ago
11
open AA data in phyDat() from read.aa()
#119
lguy
closed
3 years ago
3
acctran overestimates branch lengths
#118
kbhoehn
closed
3 years ago
3
pratchet function - Error in f$pscore_nni(INDEX[, 1L:4L]) : Not a matrix.
#117
fulviodan13
closed
3 years ago
8
Segfault error when running pratchet
#116
kbhoehn
closed
3 years ago
5
getRoot error?
#115
BEAST-Community
closed
3 years ago
1
CRAN issues
#114
ms609
closed
3 years ago
1
Fixes to `ptree` code to fix Issue #112
#113
dwbapst
closed
3 years ago
1
`ancestral.pars` fails if called for `ACCTRAN` due to internal code within `ptree` expecting a matrix and getting a list of vectors
#112
dwbapst
closed
3 years ago
3
Phangorn removal warning from CRAN
#111
danlwarren
closed
3 years ago
5
pratchet error with minimal example
#110
kbhoehn
closed
3 years ago
1
`bootstrap.pml` very slow in version 2.6.2 compared to 2.5.5
#109
pedrofale
closed
3 years ago
5
Preserve internal node names in ancestral.pml
#108
dynamiskduo
closed
3 years ago
3
optim.pml warning: In optimize(f = fn, interval = c(0.1, 500), lower = 0.1, ... : NA/Inf replaced by maximum positive value
#107
KMKemp
closed
3 years ago
1
Assigning different Q matrices to different morphological characters
#106
JMoysiuk
opened
3 years ago
0
remove duplicated "with the" in bootstrap doc
#105
josephwb
closed
3 years ago
0
attributes switched when producing trees using random.addition()
#104
jmonroynieto
closed
3 years ago
2
Should the RF.dist function emit a warning for non-binary tree if Normalize=FALSE?
#103
hyanwong
closed
3 years ago
2
acctrans sporadic demand for a binary tree
#102
axelwilhelm
closed
3 years ago
1
Minor update in superTree documentation
#101
nylander
closed
4 years ago
1
Long vectors not supported when doing computation with dist.hamming
#100
aeonsofmusic
closed
4 years ago
1
[conda] r-phangorn misses depenency openblas
#99
lmuenter
opened
4 years ago
2
Phangorn with binary state data generates error with `modelTest` and warning with `optim.pml`
#98
fpbarthel
opened
4 years ago
0
Inconsistent output from `SPR.dist()`
#97
ms609
closed
4 years ago
4
How to output all the bootstrap trees
#96
SC-Duan
closed
4 years ago
1
optim.pml error missing value where TRUE/FALSE neede
#95
Alonso-Garcia
closed
4 years ago
4
creating phyolgenetic tree using continuous data
#94
yesdavid
closed
1 year ago
1
Write ancestral reconstruction to file
#93
surh
closed
4 years ago
6
Memory leak in C_sprdist
#92
ms609
closed
4 years ago
2
read.phydat error in snphylo
#91
birsandhu
closed
4 years ago
6
densiTree does not show title
#90
richelbilderbeek
closed
4 years ago
1
optim.pml()
#89
JacobAFW
opened
4 years ago
0
unexpected tiplabels behavior using network imported from splitstree
#88
tim-oconnor
opened
4 years ago
1
One tree has a different number of tips - bootstrap.pml() function runs
#87
alptaciroglu
opened
4 years ago
2
Error in random.addition(x) : NAs in foreign function call (arg 1)
#86
BerzhanKurmanov
closed
4 years ago
0
Adding co-authors broke build 2
#85
richelbilderbeek
opened
4 years ago
0
Fix quotes
#84
richelbilderbeek
closed
4 years ago
1
Fix brackets
#83
richelbilderbeek
closed
4 years ago
2
Adding co-authors broke build
#82
richelbilderbeek
closed
4 years ago
2
Problems importing tree from Splitstree
#81
ywx1
closed
1 year ago
10
Clarify simSeq documentation
#80
ms609
closed
5 years ago
2
Minor fix on line 23
#79
kant
closed
5 years ago
0
Memory not mapped error when working on DECIPHER and phangorn packages
#78
alptaciroglu
opened
5 years ago
2
Phangorn Midpoint root changing branch lengths
#77
lchall08
closed
5 years ago
1
plotBS alternate or adaptation for 1000 node tree
#76
alptaciroglu
closed
5 years ago
1
How to extract the result of pratchet() ?
#75
Tina9
closed
5 years ago
5
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