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KnottLab
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Pipeline processing CODEX output
MIT License
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Leica outputs in a secondary directory structure
#21
nathanin
closed
3 years ago
1
Remove hard coded temp dir path
#20
nathanin
closed
3 years ago
1
Make Leica microscope data directory finding more robust
#19
nathanin
opened
3 years ago
0
Ray-related memory leak
#18
nathanin
closed
3 years ago
2
finalize stitching
#17
nathanin
closed
3 years ago
1
Why are the loops with +1 in shading correction
#16
nathanin
closed
3 years ago
0
Fix image loading logic for Positions
#15
nathanin
closed
3 years ago
0
Parallelize preprocessing operations
#14
nathanin
opened
3 years ago
0
Tracking: Documentation
#13
nathanin
opened
3 years ago
0
Docker/Singularity
#12
nathanin
opened
3 years ago
1
Reading metadata "Position X" instead of "Region X"
#11
nathanin
opened
3 years ago
1
Intensity correction
#10
nathanin
opened
3 years ago
0
Tracking: input/output
#9
nathanin
opened
3 years ago
0
TODO for Stitching functions
#8
abs51295
closed
3 years ago
2
Matlab v10
#7
nathanin
closed
3 years ago
0
Divide by zero encountered in EDOF
#6
abs51295
closed
3 years ago
0
Step by step QC built into the preprocessing pipeline
#5
nathanin
opened
3 years ago
0
Change preprocessing functions to process tiles in parallel
#4
nathanin
opened
3 years ago
1
outline and documentation
#3
nathanin
closed
3 years ago
3
Checkpoint progress and resume a failed preprocessing run
#2
nathanin
closed
3 years ago
0
Handle multiple regions & non-rectangular regions
#1
nathanin
closed
3 years ago
1