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Knowledge-Graph-Hub
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kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki
BSD 3-Clause "New" or "Revised" License
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antiviral drug table with drug stage in clinica
#324
realmarcin
opened
4 years ago
1
Fix llvmlite version to 0.31.0
#323
justaddcoffee
closed
4 years ago
1
make a dashboard to display summary stats for KG-COVID-19
#322
justaddcoffee
closed
4 years ago
6
ingest viral gene expression response signatures from Harmonizome
#321
realmarcin
opened
4 years ago
0
Fixed upload of YAML manifests in Jenkins
#320
justaddcoffee
closed
4 years ago
0
Fix upload of build stats
#319
justaddcoffee
closed
4 years ago
0
Add list of all YAML manifest files
#318
justaddcoffee
closed
4 years ago
0
ingest PubChem COVID-19 Disease Map
#317
realmarcin
opened
4 years ago
3
CHEMBL.TARGET CURIEs that represent taxon should use NCBI TAXON IDs instead
#316
justaddcoffee
closed
3 years ago
1
load current assessment of evidence for COVID-19 related treatments (from ASHP)
#315
realmarcin
opened
4 years ago
0
Add CAS COVID-19 Anti-Viral Candidate Compounds
#314
cmungall
opened
4 years ago
2
check BridgeDB synonyms etc
#313
realmarcin
opened
4 years ago
0
COVIDscholar synonyms
#312
realmarcin
closed
4 years ago
0
Removed unneeded pigz command in Jenkinsfile for tar file
#311
justaddcoffee
closed
4 years ago
0
Add support for compressed exports at merge step
#310
deepakunni3
closed
4 years ago
6
Turn scibite trx back on
#309
justaddcoffee
closed
4 years ago
0
Fix weird bug in Jenkinsfile causing downloads to fail
#308
justaddcoffee
closed
4 years ago
0
Type edges as associations
#307
deepakunni3
closed
4 years ago
2
Gpi cleanup3
#306
realmarcin
closed
4 years ago
0
iReceptor AIRR data integration
#305
RichardBruskiewich
opened
4 years ago
0
Remove mock tests that seem to confuse travis
#304
justaddcoffee
closed
4 years ago
0
fixed synonym truncations
#303
realmarcin
closed
4 years ago
0
Add simple QC test that uses ensmallen_graph report (test total node number, total edge number, upper bound on components)
#302
justaddcoffee
closed
3 years ago
0
Build contains 8k or so singleton nodes
#301
justaddcoffee
opened
4 years ago
0
Get rid of tabs in name column of nodes.tsv in SciBite ingest
#300
justaddcoffee
closed
4 years ago
0
Fix bug preventing files from being processed in SciBite ingest
#299
justaddcoffee
closed
4 years ago
0
Added a query to get counts by provided_by
#298
justaddcoffee
closed
4 years ago
0
Ingest for SciBite is emitting blank edges/nodes
#297
justaddcoffee
closed
4 years ago
1
Add a query for druggable 2nd order interactors that filters interactions by STRING combined_score
#296
justaddcoffee
opened
4 years ago
10
Added xrefs in GPI
#295
justaddcoffee
closed
4 years ago
0
combined_scores from STRING ingest should be emitted as integers not strings
#294
justaddcoffee
closed
4 years ago
2
For UniProtKB chain IDs of SARS-CoV-2 proteins, where we've chosen one arbitrarily, add the other as a xref in our curated GPI file
#293
justaddcoffee
closed
4 years ago
0
Rename query yaml file
#292
justaddcoffee
closed
4 years ago
0
Query for druggable 2nd order interactors
#291
justaddcoffee
closed
4 years ago
0
GO gene annotations for human genes
#290
justaddcoffee
opened
4 years ago
0
NCATS OpenData Portal
#289
deepakunni3
opened
4 years ago
0
Update 2nd order interact query
#288
justaddcoffee
closed
4 years ago
0
Validate graph schema using ShEx or other tool
#287
justaddcoffee
opened
4 years ago
2
Create system for checking graph schema, starting with TTD (one of our simpler ingest)
#286
justaddcoffee
opened
4 years ago
2
First pass at go-cam ingest
#285
justaddcoffee
closed
4 years ago
8
Fix parameters when exporting via KGX
#284
deepakunni3
closed
4 years ago
0
Adding documentation to heaader of GPI file
#283
cmungall
closed
4 years ago
0
Use named graphs by source for triplestore deployment?
#282
matentzn
opened
4 years ago
0
scibite synonym merge
#281
realmarcin
closed
4 years ago
3
Try bdist_wheel to fix Jenkins issue
#280
justaddcoffee
closed
4 years ago
0
Combine alias and xrefs for STRING
#279
deepakunni3
closed
4 years ago
0
Correct typo in pip call
#278
justaddcoffee
closed
4 years ago
0
Add pip install wheel to Jenkinsfile
#277
justaddcoffee
closed
4 years ago
0
Remap synonyms to synonym property in ChemblTransform
#276
deepakunni3
closed
4 years ago
0
Fix stats generation to include counts for 'provided_by' property
#275
deepakunni3
closed
4 years ago
0
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