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Knowledge-Graph-Hub
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kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki
BSD 3-Clause "New" or "Revised" License
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convert example queries from bespoke yaml to garlic (grlc)
#374
cmungall
closed
3 years ago
1
malformed index.html in build base directories
#373
justaddcoffee
opened
3 years ago
0
Implement reaction ingests (Rhea, BioPAX, etc)
#372
cmungall
opened
3 years ago
6
Consider moving curated GPI file to our data repo
#371
justaddcoffee
opened
3 years ago
1
Update example nb to work with ensmallen_graph 0.4.3
#370
justaddcoffee
closed
3 years ago
0
adding ADRP domain synonym for nsp3
#369
realmarcin
closed
3 years ago
1
Remap Chembl target to NCBITaxon for SARS-CoV-2
#368
justaddcoffee
closed
3 years ago
2
Remap Chembl target to NCBITaxon for SARS-CoV-2 [_run_jenkins]
#367
deepakunni3
closed
3 years ago
1
how to incorporate/interface drug repurposing studies based on in silico screening?
#366
realmarcin
opened
3 years ago
0
Ingest COVID antivirals from Czech Republic health ministry
#365
realmarcin
opened
3 years ago
0
Update code to use new ensmallen_graph bindings correctly
#364
justaddcoffee
closed
3 years ago
1
Wrap calls to network in Jenkinsfile in retry() blocks
#363
justaddcoffee
closed
3 years ago
1
Fix index.html for existing builds
#362
justaddcoffee
closed
3 years ago
0
Add ChEBI to merge.yaml
#361
deepakunni3
closed
3 years ago
0
Add template READMEs to the repo and actually add them to builds in Jenkinsfile
#360
justaddcoffee
closed
3 years ago
0
Add function in directory-indexer.py to add existing build
#359
justaddcoffee
opened
3 years ago
0
Escape stuff in quotes
#358
justaddcoffee
closed
3 years ago
0
Added existing builds in index.html for project dir
#357
justaddcoffee
closed
3 years ago
0
Fix mime type arg in s3 upload
#356
justaddcoffee
closed
3 years ago
0
Produce nt only in jenkins
#355
justaddcoffee
closed
3 years ago
2
Removed unzipped files from `data/raw` after processing in Scibite ingest
#354
justaddcoffee
closed
3 years ago
0
Add notebook to demonstrate running KG-COVID-19 pipeline
#353
deepakunni3
closed
3 years ago
2
Add link to KG download site to main README
#352
justaddcoffee
closed
3 years ago
0
Update query-03-sars-cov-2-interactors.yaml
#351
matentzn
closed
3 years ago
1
Update query-06-provided_by_counts.yaml
#350
matentzn
closed
3 years ago
1
Updated ensmallen_graph causes panic in some unit tests
#349
justaddcoffee
closed
3 years ago
6
pin ensmallen_graph to 0.3.6 for now to pass tests
#348
justaddcoffee
closed
3 years ago
0
Change dir when pushing to s3 run jenkins
#347
justaddcoffee
closed
3 years ago
0
Pipeline broken at blazegraph-runner stage
#346
justaddcoffee
closed
3 years ago
4
Use ensmallen graph holdouts
#345
justaddcoffee
closed
3 years ago
0
KG-COVID-19 prediction evaluation dashboard by method
#344
realmarcin
opened
3 years ago
0
downloadable files for KG-COVID-19 graph test/training sets
#343
realmarcin
opened
3 years ago
0
All but one of the SPARQL queries are broken (for MS submission)
#342
justaddcoffee
closed
3 years ago
5
URLs from http://identifiers.org/mesh are missing label
#341
kliegr
opened
3 years ago
1
Fix download bug
#340
justaddcoffee
closed
3 years ago
0
enhanced issue template
#339
nlharris
closed
3 years ago
0
Download stage is broken
#338
justaddcoffee
closed
3 years ago
0
added label
#337
nlharris
closed
3 years ago
0
Create feature-request.md
#336
nlharris
closed
3 years ago
0
Add ChEBI to our ontology transform
#335
deepakunni3
closed
3 years ago
0
Add progress indicators/message to scibite ingest
#334
justaddcoffee
closed
3 years ago
1
Added note to download.yaml to instruct users about how to download from S3 buckets
#333
justaddcoffee
closed
3 years ago
0
Add versioning of builds to Jenkinsfile
#332
justaddcoffee
closed
3 years ago
1
Update merge step by leveraging KGX
#331
deepakunni3
closed
3 years ago
0
Ingest clinical trials data from clinicaltrials.gov using yactp
#330
justaddcoffee
opened
3 years ago
0
Ingest drug -> target information from SMS (small molecular suite)
#329
justaddcoffee
opened
3 years ago
0
Ingests that use symmetric edge_labels (like interacts_with) should assert edge in both directions
#328
justaddcoffee
opened
3 years ago
1
add method to output common features for a pair of nodes (or edges eventually)
#327
realmarcin
opened
3 years ago
0
Remove encodeproject dependency
#326
justaddcoffee
closed
3 years ago
0
Roll back encodeproject to 1.0.19
#325
justaddcoffee
closed
3 years ago
0
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