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Knowledge-Graph-Hub
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kg-obo
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
https://knowledge-graph-hub.github.io/kg-obo/getting_started.html
GNU General Public License v3.0
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Expand repairs in convert_owl
#213
caufieldjh
closed
3 months ago
0
FOODON v2024-02-21 does not convert to obojson
#212
caufieldjh
closed
3 months ago
4
Fix builds failing due to importerror with moto
#211
caufieldjh
closed
3 months ago
0
Builds failing due to ImportError with `moto`
#210
caufieldjh
closed
3 months ago
0
Duplicates in node list of PCO , version 2021-05-03,
#209
LucaCappelletti94
opened
11 months ago
1
Duplicates in node list of CHIRO, version 2015-11-23
#208
LucaCappelletti94
opened
11 months ago
1
Update robot to newer version
#207
caufieldjh
opened
1 year ago
1
Bump robot version to v1.8.3 and address robot errors
#206
caufieldjh
closed
1 year ago
4
FOODON transform fails, breaking build
#205
caufieldjh
closed
1 year ago
3
Transform obo-db-ingest
#204
caufieldjh
opened
1 year ago
0
Verify that kgx validate output gets saved
#203
caufieldjh
opened
1 year ago
0
Error in stats generation: duplicate node IDs in `bco`
#202
caufieldjh
opened
1 year ago
0
Automated tests fail due to sklearn import
#201
caufieldjh
closed
1 year ago
1
Repair install issues during Jenkins runs
#200
caufieldjh
closed
1 year ago
1
Repair installation issue during Jenkins build
#199
caufieldjh
closed
1 year ago
0
Missing some recent OBO releases; tracking file is out of date
#198
caufieldjh
closed
1 year ago
3
Include transform of Biolink
#197
caufieldjh
opened
1 year ago
3
Some compressed graphs include directories, and some are missing
#196
caufieldjh
opened
1 year ago
0
Transform CHEBI slim
#195
caufieldjh
opened
1 year ago
0
Transform of `swo` does not normalize prefixes
#194
caufieldjh
opened
1 year ago
0
Some transforms still have `OBO:` prefixes for native nodes
#193
caufieldjh
opened
1 year ago
0
`fobi` has duplicated prefixes
#192
caufieldjh
closed
1 year ago
0
Transform of `vo` does not get started due to non-unique VersionIRI
#191
caufieldjh
opened
1 year ago
0
Transform of `foodon` fails during ROBOT convert from owl to obojson
#190
caufieldjh
closed
1 year ago
1
Transform of `cob` fails during ROBOT covert from owl to obojson
#189
caufieldjh
closed
1 year ago
2
IRI and version for `cdno` not detected
#188
caufieldjh
closed
1 year ago
1
Transforms of `agro`, `envo`, and `gaz` fail during post-processing
#186
caufieldjh
opened
1 year ago
9
Specific fixes for specific OBOs
#185
caufieldjh
closed
1 year ago
0
Error building stats for `bco`
#184
caufieldjh
opened
1 year ago
0
KGX problem while transforming to tsv due to Unknown CURIE prefix: file
#183
caufieldjh
closed
1 year ago
0
Add option to overwrite existing transform files on KG-OBO
#182
caufieldjh
closed
1 year ago
8
Don't parse non-graph files for stats
#181
caufieldjh
closed
1 year ago
0
Stats script fails when attempting to download uncompressed graph files
#180
caufieldjh
closed
1 year ago
0
Illegal instruction (core dumped) during build
#179
caufieldjh
opened
1 year ago
4
Update Docker image in use
#178
caufieldjh
closed
1 year ago
0
Jenkins issues re: Python 3.9
#177
caufieldjh
closed
1 year ago
3
Explicitly call Py3.9
#176
caufieldjh
closed
1 year ago
0
Remove references to Py3.8 in Jenkinsfile
#175
caufieldjh
closed
1 year ago
0
New Docker image w/ Python 3.9.14
#174
caufieldjh
closed
1 year ago
0
Need Docker image with Py3.9
#173
caufieldjh
closed
1 year ago
0
Standardize node identifiers and improve provenance
#172
caufieldjh
closed
1 year ago
4
Standardize node identifiers and prefixes
#171
caufieldjh
closed
1 year ago
1
Transform NCBI Taxon Slim
#170
caufieldjh
opened
1 year ago
0
Further cleanup and fixes
#169
caufieldjh
closed
1 year ago
0
General edits for cleanliness and quality of life
#168
caufieldjh
closed
2 years ago
0
Fixes and updates for grape and ensmallen
#167
caufieldjh
closed
2 years ago
0
Problematic graphs
#166
LucaCappelletti94
closed
1 year ago
2
Index for `stato` is a big mess
#165
caufieldjh
closed
1 year ago
2
Bump `kgx` to 1.5.7
#164
caufieldjh
closed
2 years ago
1
Install fails due to package incompatibility w/ `kgx`, `black`
#163
caufieldjh
closed
2 years ago
0
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