Knowledge-Graph-Hub neat-ml issues

Knowledge-Graph-Hub / neat-ml

Network Embedding All the Things

BSD 3-Clause "New" or "Revised" License

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issues

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Generate embeddings from Monarch graph for use in Exomiser

#100 justaddcoffee opened 1 year ago
0
Update to use most recent `grape` functions

#99 caufieldjh opened 1 year ago
1
Drop support for Tensorflow and scikit-learn methods

#98 caufieldjh opened 1 year ago
1
Update to use most recent `grape` functions for link prediction

#97 caufieldjh opened 1 year ago
0
Include line number in schema validation errors

#96 caufieldjh opened 1 year ago
0
Updates for config validation

#95 caufieldjh closed 1 year ago
0
RuntimeError when validation fails isn't very informative

#94 caufieldjh closed 1 year ago
3
Add grape methods for classifiers

#93 caufieldjh closed 1 year ago
11
setup.py not needed if using poetry

#92 hrshdhgd closed 1 year ago
0
Check for metrics params for tf.keras metrics

#91 caufieldjh closed 2 years ago
1
Output link predictions as SSSOM

#90 caufieldjh opened 2 years ago
1
Missing key in defining metrics in the config

#89 caufieldjh closed 2 years ago
0
Making neat-ml poetry-fied (plus tox, black, flake8, and mypy updates)

#88 hrshdhgd closed 1 year ago
28
Set up test workflow to use `tox`

#87 caufieldjh closed 1 year ago
1
Name change to `neat_ml` - and prep for release

#86 caufieldjh closed 2 years ago
1
Convert edge prediction methods to grape methods

#85 caufieldjh closed 1 year ago
0
Need to get history output for embeddings and classifiers

#84 caufieldjh opened 2 years ago
0
`poetry`fying the project

#83 hrshdhgd closed 1 year ago
1
Updates for newest grape

#82 caufieldjh closed 2 years ago
4
Update for Ensmallen / Embiggen -> grape

#81 caufieldjh closed 2 years ago
0
Setup.py updates and misc refactoring

#80 caufieldjh closed 2 years ago
1
Create landing page

#79 caufieldjh opened 2 years ago
0
Add `neat_schema`

#78 caufieldjh closed 2 years ago
3
Set up methods for using Ensmallen/Embiggen native methods

#77 caufieldjh closed 1 year ago
0
Move `graph_path` argument out of `graph_data` arguments

#76 caufieldjh closed 2 years ago
1
Another fix for unrecognized `graph_path` arg

#75 caufieldjh closed 2 years ago
1
Fix for TypeError due to extra graph_path keyword

#74 caufieldjh closed 2 years ago
1
Scheduled NEAT runs fail due to extra `graph_path` keyword

#73 caufieldjh closed 2 years ago
1
General cleanup and updates

#72 caufieldjh closed 2 years ago
1
Create docs

#71 caufieldjh opened 2 years ago
0
Incorporate GNNs

#70 caufieldjh opened 2 years ago
0
Upload to PyPi

#69 caufieldjh closed 1 year ago
1
In link prediction, filter nodes by prefix or other slots

#68 caufieldjh opened 2 years ago
4
Small fix to avoid passing graph_path to Graph loader

#67 caufieldjh closed 2 years ago
1
Fix for FileNotFoundError with downloads

#66 caufieldjh closed 2 years ago
1
Loading from URL looks for wrong filename

#65 caufieldjh closed 2 years ago
0
Allow config YAML to not contain graph files

#64 caufieldjh opened 2 years ago
0
New options for loading from URLs

#63 caufieldjh closed 2 years ago
3
Enable yaml helper to load embeddings from URLs

#62 caufieldjh closed 2 years ago
0
Add quickstart config and README section

#61 caufieldjh closed 2 years ago
1
OSError: [Errno 9] Bad file descriptor

#60 caufieldjh closed 2 years ago
2
Display errors to users at conclusion of NEAT run

#59 caufieldjh opened 2 years ago
1
Consider incorporating model cards to better describe and benchmark trained ML model

#58 justaddcoffee opened 2 years ago
0
Add quickstart notebook

#57 caufieldjh closed 2 years ago
1
Demonstration notebook

#56 caufieldjh closed 2 years ago
2
pre_run_checks should catch `botocore.exceptions.NoCredentialsError`

#55 caufieldjh closed 2 years ago
1
Example YAMLs should use different value for loading node types

#54 caufieldjh closed 2 years ago
1
Add graph loading helper function in the YamlHelper class

#53 caufieldjh closed 2 years ago
2
Use LinkML to parse and validate NEAT YAML files

#52 justaddcoffee closed 2 years ago
3
Create index.html upon uploading new output

#51 caufieldjh opened 2 years ago
2