KoslickiLab L2-UniFrac issues

KoslickiLab / L2-UniFrac

Expansion upon Median Unifrac to compute average phylogenetic distances between samples according to their UniFrac distance without producing negative abundance vectors.

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merge profile function

#29 raquellewei opened 2 years ago
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WGS related functions

#28 raquellewei opened 2 years ago
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Split main.py into individual scripts performing one function each and include documentations

#27 raquellewei opened 2 years ago
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Remove L1UniFrac.py

#26 raquellewei closed 2 years ago
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create parseData.py

#25 raquellewei closed 2 years ago
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This is a todo

#24 dkoslicki closed 2 years ago
1
Check abundance locations on phylogenetic tree

#23 andrew-j-millward closed 2 years ago
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Conclusion/Discussion

#22 dkoslicki closed 2 years ago
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Results

#21 dkoslicki closed 2 years ago
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Experiments

#20 dkoslicki closed 2 years ago
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Methods section

#19 dkoslicki closed 3 years ago
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Investigate more efficient SVD algorithms

#18 dkoslicki opened 3 years ago
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Write introduction

#17 dkoslicki closed 3 years ago
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Get a DOI

#16 dkoslicki opened 3 years ago
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Publish to Bioconda and PyPi

#15 dkoslicki opened 3 years ago
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Create README that provides a tutorial in how to run L2UniFrac

#14 dkoslicki opened 3 years ago
2
Run DPCoA

#13 dkoslicki opened 3 years ago
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Implement DPCoA

#12 dkoslicki opened 3 years ago
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PCoA on means

#11 dkoslicki closed 3 years ago
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Visualize

#10 dkoslicki closed 2 years ago
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Medians/Means

#9 dkoslicki closed 3 years ago
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Pre-process all the samples

#8 dkoslicki closed 3 years ago
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Assess clustering

#7 dkoslicki closed 3 years ago
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Clustering

#6 dkoslicki closed 3 years ago
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Create all pairwise L1 UniFrac on the HMP data

#5 dkoslicki closed 3 years ago
0
Missing taxonomic data in GreenGenes February 4, 2011 (referenced in supplementary information as source)

#3 andrew-j-millward closed 3 years ago
1
Issue with AssertionError on sample data with L2 Unifrac

#2 andrew-j-millward closed 3 years ago
5
Assertion error here.

#1 andrew-j-millward closed 3 years ago
1