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KrishnaswamyLab
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MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
GNU General Public License v2.0
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request: port to bioconda
#73
mheskett
closed
6 years ago
4
Fixing a typo that renders an error
#72
pkathail
closed
6 years ago
0
Fixing a typo that renders an error
#71
senattv
closed
6 years ago
1
How to reproduce Figure 7A of original paper to estimate optimal values for t and ka
#70
fbrundu
closed
6 years ago
6
Log-transformation before MAGIC
#69
fbrundu
closed
6 years ago
1
R Magic error in "Computing Kernel"
#68
ShuonanChen
closed
6 years ago
7
Installation of R package
#67
itsyogeshd
closed
6 years ago
3
Rationale for filtering based on library size
#66
fbrundu
closed
6 years ago
4
R version of magic
#65
pkathail
closed
6 years ago
0
Unused and optional dependencies
#64
iosonofabio
closed
6 years ago
0
optional deps for Python package
#63
iosonofabio
closed
6 years ago
1
Index out of range when changing ka,t,pca values
#62
Hoohm
closed
6 years ago
2
interactive 3d plots compatibility
#61
wen-zhou-caltech
closed
6 years ago
1
R package 'Error in t.default(W) : argument is not a matrix'
#60
wen-zhou-caltech
closed
6 years ago
6
R package of magic
#59
bvieth
closed
6 years ago
2
Update README.md
#58
pkathail
closed
6 years ago
0
add R version of magic
#57
pkathail
closed
6 years ago
0
'~/Documents/Sophomore/Lab/wishbone/data/sdata_nn_TGFb_day_8_10.csv'
#56
Puriney
closed
7 years ago
3
fix 'The truth value of a DataFrame is ambiguous' error
#55
pkathail
closed
7 years ago
0
Running the python implementation in R
#54
asmagen
closed
6 years ago
3
Starting Magic: ImportError: No module named '_tkinter'
#53
xyl012
closed
7 years ago
0
fix gene names in jupyter notebook tutorial
#52
pkathail
closed
7 years ago
0
Gene name error in the tutorial
#51
YubinXie
closed
7 years ago
2
fix loading of saved session
#50
pkathail
closed
7 years ago
0
MAGIC.py bug fix
#49
pkathail
closed
7 years ago
0
Introducing artificial dropout issue
#48
radio1988
closed
6 years ago
7
Error when trying different -k and -l parameters
#47
gufranca
closed
7 years ago
2
Discrepancy between the MAGIC paper and Matlab code
#46
NikTuzov
closed
7 years ago
4
Issues with MAGIC GUI
#45
Thralni
closed
7 years ago
4
Error when trying to run magic
#44
kbrulois
closed
6 years ago
2
pytables dependency
#43
pkathail
closed
7 years ago
0
install.py doesn't correctly request pytables
#42
ebzheng
closed
7 years ago
1
Changed sklearn to scikit-learn
#41
pkathail
closed
7 years ago
0
Sklearn dependency incorrect
#40
deto
closed
7 years ago
1
How to install MAGIC
#39
slowkow
closed
7 years ago
1
Bug fix
#38
pkathail
closed
7 years ago
0
mg.py - TypeError: Can't convert 'int' object to str implicitly
#37
darneson
closed
7 years ago
1
call MAGIC from script, improved plotting axis selection, HDF5 data loading
#36
pkathail
closed
7 years ago
0
Output csv files from MAGIC?
#35
Enoxx
closed
6 years ago
6
re-producing the figures in MAGIC paper
#34
radio1988
closed
6 years ago
9
cannot import properly
#33
chenlingantelope
closed
6 years ago
2
Getting bad results using different normalization
#32
shmohammadi86
closed
5 years ago
5
Recommended normalization methods
#31
b-dawes
closed
6 years ago
3
lib size norm and log transform
#30
pkathail
closed
7 years ago
0
removed dependencies on Maggioni's code
#29
dvdijk
closed
7 years ago
0
removed Maggioni's code
#28
dvdijk
closed
7 years ago
0
error loading phenograph
#27
radio1988
closed
7 years ago
2
magic implementation in matlab that doesnt require external diffusion map package
#26
dvdijk
closed
7 years ago
0
mmread dependency issue
#25
asmagen
closed
7 years ago
15
unable to import gene expression matrix in csv format
#24
yuqiyuqitan
closed
7 years ago
1
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