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CIDR_DATA_ARCHIVING
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fasta files with .fa extension
#273
Kurt-Hetrick
opened
4 months ago
0
umi aware demultiplexing
#272
Kurt-Hetrick
opened
5 months ago
0
if there is a pre-existing file with a .list extension it can break file extension summary calculations
#271
Kurt-Hetrick
opened
6 months ago
0
bedgraph
#270
Kurt-Hetrick
opened
10 months ago
0
robustness to white spaces
#269
Kurt-Hetrick
opened
1 year ago
0
add h5 files to general gzip
#268
Kurt-Hetrick
closed
1 year ago
1
detect reference used
#267
Kurt-Hetrick
closed
1 year ago
1
bam files not coordinate sorted
#266
Kurt-Hetrick
opened
2 years ago
0
migrate over to using singularity containers
#265
Kurt-Hetrick
opened
2 years ago
0
add tsv as a file type/extension to compress
#264
Kurt-Hetrick
closed
2 years ago
1
need to rebuild r containers used to merge annovar output with splicing algorithms
#263
Kurt-Hetrick
closed
3 years ago
1
Hu_EnamelDefects_SeqWholeExome_020615_5_2258
#262
Kurt-Hetrick
closed
2 years ago
2
add time stamps to all list files
#261
Kurt-Hetrick
closed
4 years ago
1
H_Beckman_Cancer_WGHum-SeqWholeExome_141120_1_929
#260
Kurt-Hetrick
closed
2 years ago
1
H_Baras_FFPE_Bladder_Cancer_WGHum-SeqCustom_180110_1_2167
#259
Kurt-Hetrick
closed
2 years ago
1
delete cram files if conversion failed
#258
Kurt-Hetrick
closed
4 years ago
1
ValidateSam throwing non-zero exit codes
#257
Kurt-Hetrick
closed
4 years ago
2
parentheses in path
#256
Kurt-Hetrick
closed
4 years ago
1
rnd files that did not go through cidrseqsuite
#255
Kurt-Hetrick
closed
4 years ago
1
what to do with files with white space in names or paths...
#254
Kurt-Hetrick
closed
4 years ago
3
use pigz instead of gzip
#253
Kurt-Hetrick
closed
4 years ago
1
compress all non-vcf and bam files as one jobs
#252
Kurt-Hetrick
closed
4 years ago
1
compress all vcf files in one job
#251
Kurt-Hetrick
closed
4 years ago
1
update to gatk 4 when binning q scores
#250
Kurt-Hetrick
closed
4 years ago
1
add new files types for md5 validation check
#249
Kurt-Hetrick
closed
4 years ago
1
send summary emails/notifications
#248
Kurt-Hetrick
closed
4 years ago
2
parallelize samtools flagstat
#247
Kurt-Hetrick
closed
4 years ago
1
ignoring GRCF specific file types
#246
Kurt-Hetrick
closed
4 years ago
1
summarize gzipped compressed file sizes
#245
Kurt-Hetrick
closed
4 years ago
1
mendel - M_Valle_nsobreira_raskin_cleft
#244
Kurt-Hetrick
closed
4 years ago
2
mendel - M_Valle_Twist_Eval
#243
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - Seramag_concentration_test
#242
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - RaD_CIDR_Marosy_Romm
#241
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - Peng_CNV_Simulation
#240
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - Ostrander_Test_072315
#239
Kurt-Hetrick
closed
5 years ago
1
cidr rnd - Ostrander_Downsample_100bp_150803
#238
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_XTHS_HiSeq_171027_DS
#237
Kurt-Hetrick
closed
4 years ago
2
cidr rnd - CIDRnD_XT2_24plex_Kinome_SetC
#236
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_XT2_16plex_Kinome_SetB
#235
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_XT2_16plex_Kinome_SetA
#234
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_XT_HS_MiSeq_170929
#233
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - CIDRnD_XT_FastHYB_manual_MiSeq
#232
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_XT_FastHyb
#231
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - CIDRnD_V6_BedTest_NEW
#230
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_V6_BedTest_Exonic
#229
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_Swift_56G_Panel_DS
#228
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - CIDRnD_Swift_PCRfree_WGS
#227
Kurt-Hetrick
closed
5 years ago
0
cidr rnd - CIDRnD_Swift_ID_Panel
#226
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - CIDRnD_Swift_56G_Panel
#225
Kurt-Hetrick
closed
4 years ago
1
cidr rnd - CIDRnD_Solulink
#224
Kurt-Hetrick
closed
5 years ago
0
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