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LieberInstitute
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DLPFC_snRNAseq
snRNA_seq portion of the spatialDLPFC project
http://research.libd.org/spatialDLPFC/
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Spatial registration results using BayesSpace k=9 domains
#26
cindyfang70
closed
6 months ago
4
Create shareable SCE object for BioC
#25
lcolladotor
closed
1 year ago
0
Supplementary Tables
#24
lahuuki
closed
1 year ago
1
cell-cell communication of DLPFC snRNA data
#23
boyiguo1
closed
1 year ago
0
Create heatmaps of snRNA CCC results
#22
boyiguo1
closed
1 year ago
3
[Documentation] Rounds of snRNA CCC
#21
boyiguo1
closed
1 year ago
4
CCC Bug: Inconsistent cell type annotation
#20
boyiguo1
closed
1 year ago
1
CCC Analysis of snRNA Data using LIANA
#19
boyiguo1
closed
1 year ago
4
Calculate cell-cell similarity matrix use SC3
#18
boyiguo1
closed
1 year ago
2
Cell Lineage Analysis with SoptSC
#17
boyiguo1
closed
1 year ago
3
Proposed Analysis for Integrating snRNA data and spot deconvolusion results
#16
boyiguo1
closed
1 year ago
2
Refine Oligo_01 Cluster
#15
lahuuki
closed
1 year ago
3
Be explicit with the conda_R version
#14
lcolladotor
closed
1 year ago
1
Merge clusters by spatial registration vs the pilot data
#13
lcolladotor
closed
2 years ago
2
Compare HC Annotations with Azimuth Results
#12
lahuuki
closed
1 year ago
4
Change "Endo.Mural" to "EndoMural"
#11
lahuuki
closed
2 years ago
0
sync colnames for data across the DLPFC datasets
#10
lahuuki
closed
2 years ago
0
Create an ExperimentHub package to share data
#9
lahuuki
closed
1 year ago
1
Explore feasibility of using SingleR with the snRNA-seq data
#8
lahuuki
closed
2 years ago
1
Find cluster marker genes
#7
lcolladotor
closed
1 year ago
4
Cluster nuclei
#6
lcolladotor
closed
2 years ago
0
Normalize data
#5
lcolladotor
closed
2 years ago
3
Compute doublet scores (which are useful in EDA later)
#4
lcolladotor
closed
2 years ago
1
Run emptyDrops for each sample instead of all combined
#3
lcolladotor
closed
2 years ago
0
Create raw SCE object
#2
lcolladotor
closed
2 years ago
0
Get round0 sample info
#1
lcolladotor
closed
2 years ago
0