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LouisFaure
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scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
https://scfates.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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Fitting & clustering significant features color_exp
#34
pmarzano97
opened
1 week ago
0
imcompatible with cellrank version2
#33
wangmhan
closed
2 weeks ago
1
get a weird figure following the notebook named Bone marrow fates
#32
huili469r
opened
1 month ago
1
Bump jinja2 from 3.1.3 to 3.1.4 in /docs
#31
dependabot[bot]
closed
2 weeks ago
0
Error when `scf.tl.dendrogram()`
#30
Fantasque68
closed
3 months ago
6
Maximum complexity of trees [question]
#29
vitkl
opened
4 months ago
2
Cannot install with python 3.8, need python >=3.9
#28
quantumdot
closed
4 months ago
1
KeyError: 'explode' exception while plotting clusters
#27
quantumdot
closed
4 months ago
3
Bump jinja2 from 2.11.3 to 3.1.3 in /docs
#26
dependabot[bot]
closed
4 months ago
0
Questions about scf.pl.single_trend'
#25
SummerColdWind
closed
5 months ago
4
`root` and `leaves` with `test_association()`
#24
james-cranley
closed
4 months ago
2
error while using scf.tl.linearity_deviation
#23
rLannes
closed
10 months ago
1
RecursionError: maximum recursion depth exceeded in scf.tl.slide_cells
#22
willey2020
closed
10 months ago
2
scf.pl.trends error on jupyter notebook
#21
hw1804
closed
10 months ago
10
GPU mode dependencies troubleshooting
#20
willey2020
closed
10 months ago
4
issue with scf.tl.cluster and scf.pl.trends functions in notebook
#19
16nikita
closed
10 months ago
2
crashes due to rpy2 not finding the R install on conda
#18
yedeer12
closed
4 months ago
1
When running scf.tl.curve, module 'networkx' has no attribute 'to_scipy_sparse_matrix'
#17
yedeer12
closed
11 months ago
2
dendrogram Tree line and cells are not alligned in the plot
#16
willey2020
closed
1 year ago
3
error: keyword grid_b is not recognized with scf.pl.slide_cors
#15
pchiang5
closed
1 year ago
2
scf.tl.pseudotime error
#14
pchiang5
closed
1 year ago
2
Error in scf.tl.branch_specific
#13
min0609
closed
4 months ago
1
DLL load failed while importing _loess: The specified module could not be found.
#12
rajpiyush18
closed
10 months ago
1
Testing fit: KeyError: 'de_p'
#11
wbrett87
closed
4 months ago
5
Error in sci.pl.single_trend
#10
PaulJonasJost
closed
4 months ago
1
scf.tl.pseudotime:ValueError: probabilities do not sum to 1
#9
annrosebright
closed
4 months ago
1
error in `pseudotime()`
#8
zoepiran
closed
4 months ago
3
error in test_association
#7
jksr
closed
1 year ago
6
Importing scFates
#6
sidrahmaryam-cyber
closed
1 year ago
4
error in tl.test_association, "pip3 install rpy2" not working
#5
Roger-GOAT
closed
2 years ago
4
Errors with scf.pl.trends
#4
Qotov
closed
2 years ago
3
Unable to import scFates
#3
Marius1311
closed
3 years ago
2
citing CellRank
#2
Marius1311
closed
3 years ago
2
Release v0.2.1
#1
LouisFaure
closed
3 years ago
0