MDU-PHL meningotype issues

MDU-PHL / meningotype

In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

GNU General Public License v3.0

11 stars 6 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Provide an option to not print the header on the output

#44 pvanheus opened 1 year ago
0
If an analysis ends in ERROR the return code of the tool should not be 0

#43 pvanheus opened 1 year ago
0
DB should have "version number" and this version number should be reported in output

#42 pvanheus opened 1 year ago
0
Updating DB outside of tool-installation directory should be possible

#41 pvanheus opened 1 year ago
2
Meningotype does not fail if any of the subprocesses it calls (isPcr, mlst) fail

#40 stroehleina closed 1 year ago
1
Update meningotype.py

#39 boasvdp opened 2 years ago
0
Mendevar

#38 stroehleina opened 2 years ago
3
Meningotype seems to have trouble identifying FetA F5-1

#37 boasvdp opened 2 years ago
1
Need to add tests for updating DB

#36 andersgs opened 3 years ago
0
meningotype can not work

#35 chen1i6c04 closed 3 years ago
5
Kristy

#34 kristyhoran closed 3 years ago
0
Updates to Py3 upgrade

#33 schultzm closed 3 years ago
2
Adding other serotype E, cnl etc

#32 lexleong closed 5 years ago
2
Updated installation instructions

#31 embatty closed 6 years ago
0
Installing dependencies: homebrew/science is deprecated

#30 embatty closed 6 years ago
1
Fixing incorrect exit code upon successful updating of the database.

#29 andersgs closed 6 years ago
0
Migrate to Python 3

#28 tseemann closed 3 years ago
2
Needs some documentation on interpretation of output

#27 andersgs opened 7 years ago
2
Not compatible with latest version of MLST

#26 andersgs closed 7 years ago
0
seroWY doesn't handle gaps

#25 kwongj opened 7 years ago
0
Add capacity to perform cgMLST

#24 kwongj opened 7 years ago
2
Add option for using multiple CPUs for BLAST

#23 kwongj closed 7 years ago
1
Add --checkdeps and check within application too?

#22 tseemann closed 7 years ago
0
Refactor code

#21 tseemann opened 7 years ago
0
Consider combining all .fas files and do a single blast

#20 tseemann opened 7 years ago
0
Add to bioconda

#19 tseemann closed 3 years ago
1
Add to homebrew/science

#18 tseemann closed 5 years ago
1
Start preparing for release on PyPi

#17 tseemann closed 3 years ago
1
Does --db need to be BLAST formatted?

#16 tseemann closed 7 years ago
1
Make --version more standards compliant

#15 tseemann closed 7 years ago
1
Barf nicer on non-existent filename

#14 tseemann closed 7 years ago
0
--printseq should NOT write to folder in current directory

#13 tseemann closed 7 years ago
0
Missing exact hits to PorA

#12 tseemann closed 7 years ago
5
Update Markdown docs to strict format

#11 tseemann closed 7 years ago
0
BLAST databases don't get updated with --updatedb

#10 kwongj closed 7 years ago
0
error in menwy.py with non-P/G/S amino acid in EX7E motif

#9 kwongj closed 7 years ago
1
Check ctrA PCR

#8 kwongj closed 7 years ago
1
porB

#7 kwongj closed 7 years ago
1
User can't run --update if installed globally

#6 tseemann closed 7 years ago
1
incorrectly calls truncated alleles

#5 kwongj closed 7 years ago
1
Handle new Y+W serotype

#4 tseemann closed 7 years ago
1
Pip install fix2

#3 andersgs closed 8 years ago
0
Pip install fix

#2 andersgs closed 8 years ago
0
Pip install

#1 andersgs closed 8 years ago
1