MDU-PHL ngmaster issues

MDU-PHL / ngmaster

In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)

GNU General Public License v3.0

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

printseq not working

#42 SandersonHaley opened 1 year ago
0
NG-STAR ST not assigned

#41 SandersonHaley opened 1 year ago
0
installed via conda but it says it is version ngmaster 0.5.8

#40 waalkes opened 1 year ago
0
ngmaster fails when mincov or minid flags are used

#39 kapsakcj opened 1 year ago
0
Updating NGSTAR Database Failure - ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))

#38 maurkarr opened 1 year ago
1
No NG-STAR when >1 23S alleles are found

#37 stroehleina opened 1 year ago
0
Bump certifi from 2020.4.5.1 to 2022.12.7

#36 dependabot[bot] opened 1 year ago
0
Major update

#35 stroehleina closed 2 years ago
0
www.ng-mast.net is down

#34 mschmerer opened 3 years ago
0
Bump urllib3 from 1.25.9 to 1.26.5

#33 dependabot[bot] opened 3 years ago
0
Errors when running make command in isPcrSrc directory

#32 jayminz closed 4 years ago
3
Add to bioconda

#31 tseemann opened 5 years ago
1
Switch to semantic X.Y.Z don't have -beta

#30 tseemann closed 4 years ago
1
updatedb unable to update database

#29 DrReemaSingh closed 4 years ago
1
Database update Error

#28 DrReemaSingh closed 5 years ago
6
Finding discrepancies between ngmaster and pubmlst allele calls

#27 slvrshot opened 5 years ago
13
Move README from Markdown to RST to work on pypi

#26 andersgs closed 6 years ago
0
extra_require error

#25 andersgs closed 6 years ago
1
load_entry_point

#24 DrReemaSingh closed 6 years ago
2
Upgrade to python3

#23 schultzm closed 6 years ago
0
multiple alleles missed if one is novel

#22 simonrharris closed 7 years ago
3
Difficulties installing isPcr from source on MacOS

#21 kwongj closed 8 years ago
1
Updated function to handle update_db

#20 andersgs closed 8 years ago
0
--updatedb creates additional blank temp files

#19 kwongj closed 8 years ago
1
Update README

#18 andersgs closed 8 years ago
0
command_line.py is empty

#17 tseemann closed 8 years ago
1
Need instructions on how to install git version

#16 tseemann closed 8 years ago
2
pip version doesn't know where the databases are

#15 tseemann closed 8 years ago
2
Pip install

#14 andersgs closed 8 years ago
0
updating database - add try/except

#13 kwongj closed 8 years ago
1
report multiple alleles better for parsing

#12 kwongj closed 8 years ago
1
fix duplicate allele issue

#11 kwongj closed 8 years ago
1
Add --csv option

#10 tseemann closed 8 years ago
1
Add --citation option

#9 tseemann closed 8 years ago
1
Consider replacing isPcr with Python code

#8 tseemann opened 8 years ago
0
Remove (or document) BLAST dependency

#7 tseemann closed 8 years ago
1
Remove hard coded numbers

#6 tseemann closed 8 years ago
1
Messages need to go to STDERR

#5 tseemann closed 8 years ago
1
Check binary deps exist before running

#4 tseemann closed 8 years ago
1
Add a simple --test option to run an include example

#3 tseemann closed 8 years ago
1
Add to pip

#2 tseemann closed 8 years ago
1
Automate the database update procedure

#1 tseemann closed 8 years ago
3