MOZI-AI knowledge-import issues

MOZI-AI / knowledge-import

Import scripts for the Bio-Atomspace

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issues

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Use PatientNode for patients

#52 Habush closed 3 years ago
0
Add all state, pre treatment and outcome variables in patient data import

#51 Habush closed 3 years ago
0
Add scripts for importing breast cancer patient data

#50 Habush closed 3 years ago
0
fix escaped backslashes

#49 noskill closed 3 years ago
1
Import current Gene symbols

#48 tanksha closed 3 years ago
2
add link to google document

#47 noskill closed 3 years ago
0
New atomtype

#46 tanksha closed 3 years ago
0
invalid format for drugbank import

#45 noskill opened 3 years ago
0
New atomtype

#44 tanksha closed 3 years ago
0
Adds Chebi Ontology type

#43 tanksha closed 3 years ago
0
New atomtype

#42 tanksha closed 3 years ago
0
Update atom types of Pharmagkb pathway dataset

#41 tanksha closed 3 years ago
1
New atomtype

#40 tanksha closed 3 years ago
0
New atomtype

#39 tanksha closed 3 years ago
0
Add the drug targets from DrugBank

#38 leungmanhin closed 3 years ago
0
Fix issues with covid dataset import

#37 Habush closed 3 years ago
0
Use consistent predicate for node names

#36 Habush opened 4 years ago
0
new converter and modified old

#35 DaddyWesker closed 4 years ago
0
gocams import

#34 noskill closed 4 years ago
1
parse molecular complex

#33 noskill closed 4 years ago
2
add timeout to network request

#32 noskill closed 4 years ago
2
GO with no genes associated?

#31 leungmanhin opened 4 years ago
0
GO namespace is missing for some of the imported GO

#30 leungmanhin opened 4 years ago
1
replace copy-paste with import in cell ontology import script

#29 mjsduncan opened 4 years ago
0
Include PPI in covid dataset

#28 Habush closed 4 years ago
2
script for converting of cell ontology has been added

#27 DaddyWesker closed 4 years ago
0
convert "from_organism" predicate to MemberLink format to display sars2 genes/proteins as a pathway

#26 mjsduncan opened 4 years ago
0
Add the missing ChEBI prefix in the drugbank conversion script

#25 leungmanhin closed 4 years ago
1
separate the import of or semantically distinguish computed vs curated UniProt proteins mapped to GeneNodes

#24 mjsduncan opened 4 years ago
1
Add links to the imported dbs on the README

#23 Habush opened 4 years ago
0
replace TaxonomyID with ncbi, fix field names

#22 noskill closed 4 years ago
0
Conflicting "has_name" for ChEBI nodes in different imported datasets

#21 Necr0x0Der opened 4 years ago
1
inherit pathway instances in bio-atomspace from ConceptNode("pathway")

#20 noskill opened 4 years ago
1
Script for importing Drugbank

#19 leungmanhin closed 4 years ago
0
Adds latest csv source

#18 tanksha closed 4 years ago
0
Recent fixes

#17 tanksha closed 4 years ago
0
causal activity models

#16 noskill closed 4 years ago
1
Use has_name instead of has_chebi_id to match the current bio-atomspace

#15 tanksha opened 4 years ago
0
use ChEBI instead of human readable names

#14 noskill closed 4 years ago
0
parse interactions in pharmagkb

#13 noskill closed 4 years ago
0
Generate Atomese for the TCMID ingredient-targets-disease-drug network

#12 leungmanhin closed 4 years ago
0
TCMID conversion script

#11 leungmanhin closed 4 years ago
0
semantics for bio-atomspace 2.0

#10 mjsduncan closed 3 years ago
57
Fixes to the atomese representation

#9 tanksha closed 4 years ago
0
Fixes to atomese representation

#8 tanksha closed 4 years ago
0
pharamagkb import

#7 noskill closed 4 years ago
2
Replace outdated uniprot ID's with current

#6 tanksha opened 4 years ago
0
Editted to include chebi, uberon and CL

#5 tanksha closed 4 years ago
0
use argparse to handle command line arguments

#4 noskill closed 4 years ago
0
support tab3 biogrid format

#3 noskill closed 4 years ago
0