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MPIIComputationalEpigenetics
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Dive
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Invisible panel block the screen
#168
felipealbrecht
closed
4 years ago
0
Chromatin States not showing for hg19 data selection
#167
felipealbrecht
closed
4 years ago
1
Mark as optional (checked as not) in the similar biosource and epigenetic marks
#166
felipealbrecht
opened
5 years ago
0
Analysis by tiling regions
#165
felipealbrecht
opened
5 years ago
0
Increase memory of the middleware.
#164
felipealbrecht
closed
5 years ago
1
Select multiple experiments in the tree table
#163
felipealbrecht
opened
5 years ago
0
Load a Dive analysis by an URL
#162
felipealbrecht
closed
6 years ago
0
Correctly load the query_id
#161
felipealbrecht
closed
6 years ago
0
[server] Remove Pattern Annotations from Deepblue
#160
felipealbrecht
closed
6 years ago
0
Look for reverse transcription in the motif dataset generation
#159
felipealbrecht
opened
6 years ago
0
Look for reverse transcription in the motif search
#158
felipealbrecht
opened
6 years ago
0
Change title in dataset select for comparison to "Select Comparison dataset"
#157
felipealbrecht
closed
6 years ago
0
Get the overlapping gene names of the selected region
#156
felipealbrecht
opened
6 years ago
0
(query organogram) show the experiments property when click on it
#155
felipealbrecht
closed
6 years ago
0
(query organogram) show/use arrows for showing the data path
#154
felipealbrecht
closed
6 years ago
0
(query organogram) Show the #region in select_experiments/annotation
#153
felipealbrecht
closed
6 years ago
0
[middleware] the get request overlap progress info does not match with the number of partial results.
#152
felipealbrecht
closed
6 years ago
0
Rename the combo box text "Select Biosources" to "Click here to select BioSources"
#151
felipealbrecht
closed
6 years ago
0
Change the default cut-off in similar screen to 5%
#150
felipealbrecht
closed
6 years ago
0
In the Dataset selection, show the right panel as soon the user click on the dataset, and "loading"when loading the experiment information
#149
felipealbrecht
closed
6 years ago
0
(not dive, more deepblue) - Improve the request status pooling
#148
felipealbrecht
closed
6 years ago
0
Filter Overlap and Not Overlap to All Datasets (not only main dataset)
#147
felipealbrecht
opened
6 years ago
0
Directly filter by some GO term
#146
felipealbrecht
opened
6 years ago
0
in the GO page, convert p-value to log.
#145
felipealbrecht
closed
6 years ago
0
in the Gene pages, click on the bar and filter by gene or by the new column
#144
felipealbrecht
closed
6 years ago
0
In the GO page, include a combo Box to select between p-value, counts, and ration
#143
felipealbrecht
opened
6 years ago
0
Do not process similar datasets in the data wizard, only in the similar datasets step
#142
felipealbrecht
closed
6 years ago
0
Show the number of peaks in the data selection
#141
felipealbrecht
closed
6 years ago
0
Show the number of peaks in the comparison data
#140
felipealbrecht
closed
6 years ago
0
Save actual state
#139
felipealbrecht
closed
6 years ago
0
Show BioSource and Epigenetic Mark in the comparison data
#138
felipealbrecht
closed
6 years ago
0
Use GO Terms as query
#137
felipealbrecht
closed
6 years ago
0
Use Gene list as query
#136
felipealbrecht
closed
6 years ago
0
Improve data stack items
#135
felipealbrecht
closed
6 years ago
0
Click on GO term and filter by overlapping genes with this GO term
#134
felipealbrecht
closed
6 years ago
0
Filter by p-value in gene ontology
#133
felipealbrecht
closed
6 years ago
0
Use DNA pattern as query
#132
felipealbrecht
closed
6 years ago
0
Annoying left bar is being shown when switching from CSSs to Histone Marks
#131
felipealbrecht
closed
6 years ago
0
Include more information in the loading bar
#130
felipealbrecht
opened
6 years ago
0
better loading feedback in the gene ontology screen
#129
felipealbrecht
closed
6 years ago
0
Use case: TFs analysis
#128
felipealbrecht
closed
4 years ago
11
modify query regions
#127
felipealbrecht
closed
6 years ago
0
generate random permutation datasets
#126
felipealbrecht
opened
6 years ago
0
Include p-value in gene ontology
#125
felipealbrecht
closed
6 years ago
0
Automatically load gene overlapping
#124
felipealbrecht
closed
6 years ago
0
Query Dataset does not change after initial load
#123
felipealbrecht
closed
6 years ago
1
Feedback to the user when loading biosources list in peaks charts
#122
felipealbrecht
opened
6 years ago
0
Similar biosource wizard - not possible to select last item after clicking select all
#121
felipealbrecht
closed
6 years ago
0
Improve first loading time
#120
felipealbrecht
closed
6 years ago
1
analyze why sox2 ( ENCFF000AVP) overlaps so much with genes
#119
felipealbrecht
closed
6 years ago
4
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