issues
search
MRCIEU
/
gwas2vcf
Convert GWAS summary statistics to VCF
MIT License
47
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
error：Variants could not be read
#83
GGboy-Zzz
closed
1 month ago
0
no 'shape' argument in main.py
#82
GGboy-Zzz
closed
2 months ago
1
Does gwas2vcf implementation of multi GWAS storage?
#81
nicksunderland
opened
1 year ago
2
jsonmeta parameter implementation?
#80
nicksunderland
opened
1 year ago
0
Use gzip module to check the magic number of inputs
#79
gmauro
opened
1 year ago
0
a dataset processed with gwas2vcf is different from the same dataset preprocessed by Opengwas
#78
matteofloris
opened
2 years ago
2
fix
#77
mcgml
closed
2 years ago
0
Same rsID assigned to two different SNPs
#76
matteofloris
closed
2 years ago
4
Bump numpy from 1.21.0 to 1.22.0
#75
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.15.4 to 1.21.0
#74
dependabot[bot]
closed
2 years ago
0
pylint: variable names fixes
#73
darked89
closed
2 years ago
2
replace remaining format with f strings
#72
darked89
closed
2 years ago
1
style refactor using python shed --py38-plus
#71
darked89
closed
2 years ago
1
merge multiple GWAS files
#70
jielab
opened
2 years ago
6
Qualify name for Docker example in docs
#69
vreuter
closed
3 years ago
1
code coverage
#68
mcgml
opened
3 years ago
0
add workflow to mkdocs
#67
mcgml
opened
3 years ago
0
OSError: error when opening file `human_g1k_v37.fasta.gz`
#66
jielab
closed
3 years ago
1
ValueError: fetch requires an index
#65
jielab
closed
3 years ago
1
could not read from remote repository
#64
jielab
closed
3 years ago
2
check for the chrom names in the input vs dbSNP & reference fasta
#63
darked89
opened
3 years ago
1
add citation.cff
#62
mcgml
opened
3 years ago
0
add to pypi
#61
mcgml
opened
3 years ago
1
How to parse GWAS from PMID: 30224653
#60
vforget
closed
3 years ago
2
pickle.dump(result, results): no space left on the device
#59
darked89
closed
3 years ago
1
reference genome base checking
#58
darked89
closed
3 years ago
1
md5 checksums for inputs
#57
darked89
opened
3 years ago
0
benchmarks and speedups
#56
darked89
opened
3 years ago
8
Docs
#55
mcgml
closed
3 years ago
0
different naming schemes in dbsnp.v153.b37.vcf.gz vs dbsnp.v153.hg38.vcf.gz
#54
darked89
closed
3 years ago
3
alias file
#53
tillandlauer
closed
3 years ago
1
add support for P values with precision that would underflow a float
#52
BenjaminRAlexander
closed
3 years ago
1
compress fasta files used in example
#51
darked89
closed
3 years ago
1
No output file
#50
edwardhumphreys
closed
3 years ago
12
build and push docker images to dockerhub
#49
mcgml
closed
3 years ago
0
Difficulty with --dbsnp/alias
#48
jinghuazhao
closed
3 years ago
9
Sample sizes formatted to only 6 significant digits
#47
mja
closed
3 years ago
1
update alias.txt
#46
Titorat
closed
3 years ago
1
add QC report to docs
#45
mcgml
closed
3 years ago
0
host reference genome data
#44
mcgml
closed
3 years ago
4
add chromosome alias option
#43
mcgml
closed
3 years ago
0
inf in estimate field
#42
mcgml
closed
3 years ago
0
create flow diagram of operation
#41
mcgml
closed
4 years ago
0
update to new schema
#40
mcgml
opened
4 years ago
0
update docs
#39
mcgml
closed
3 years ago
0
Dbsnp
#38
mcgml
closed
4 years ago
0
Norm
#37
mcgml
closed
4 years ago
0
check binary/continuous flag in vcf files
#36
mcgml
opened
4 years ago
0
implement VR package
#35
mcgml
opened
4 years ago
0
allow json fields in commandline input
#34
mcgml
opened
4 years ago
1
Next