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MSGFPlus
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msgfplus
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
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MSGF+ Training parameter location
#56
mrForce
closed
5 years ago
2
Spectral DAG model question
#55
mrForce
closed
5 years ago
11
MGF Parsing Error
#54
verheytb
closed
5 years ago
4
FragMethod not correct?
#53
leiwang-me
opened
5 years ago
1
MSGF+ always run using at most 400% CPUs.
#52
BioWu
opened
5 years ago
2
SpectrumIdentificationResult and DB Search
#51
mrForce
closed
5 years ago
17
RTINSECONDS does not seem to be parsed from MGF input file
#50
arnscott
closed
5 years ago
3
duplicate entry
#49
cdlawless
closed
5 years ago
23
element 'MzIdentML' declares duplicate identity constraint unique values
#48
cdlawless
closed
6 years ago
1
Make user can specify where BuildSA generate files
#47
hsiaoyi0504
closed
6 years ago
3
High-res hybrid fragmentation (i.e. Fusion EThcD)
#46
Dan-Zed
opened
6 years ago
4
Customerized enzyme cleavage setting does not working
#45
lanyuchunmo
opened
6 years ago
1
Glu-C specificity
#44
ghost
opened
6 years ago
2
Error occurred while building the index - Exception in thread "main" java.lang.NegativeArraySizeException
#43
lanyuchunmo
opened
6 years ago
10
Regarding missed cleavages.
#42
haripazhayath
opened
6 years ago
2
Add TDF nativeID format
#41
chambm
closed
6 years ago
4
Peptide Matches Per Spectrum
#40
wong15w
closed
5 years ago
6
MSGFPlus NullPointerException
#39
bernt-matthias
closed
5 years ago
1
PSMs matching to unique proteins
#38
haripazhayath
closed
6 years ago
6
Add maximum missed cleavage parameter
#37
CWRU-CPB
closed
6 years ago
3
Add maximum missed cleavage parameter
#36
CWRU-CPB
closed
6 years ago
4
With thermo fusion lumos, which codes should I use in instrument option?
#35
TnakaNY
closed
6 years ago
3
Neutral losses in MSGF+
#34
andrewrobertjones
opened
6 years ago
6
Refinements in Tests
#33
ypriverol
closed
6 years ago
9
Read ion mobility from mzML and write to mzIdentML
#32
chambm
closed
6 years ago
13
MS-GF+ now requires Java 8?
#31
hbarsnes
closed
4 years ago
1
msgf_load_database_error
#30
sjtuyf
closed
6 years ago
2
MSGFPlus error message for empty fasta input
#29
bernt-matthias
opened
6 years ago
2
Use single progress percentage
#28
chambm
closed
6 years ago
1
Suffix Creation: Java heap space Except in thread 'main' java.lang.OutOfMemoryError
#27
jspmccain
closed
6 years ago
1
'Warning: Illegal reflective access'
#26
jspmccain
closed
6 years ago
5
Differentiate non-specific digest and "no cleavage" in Enzyme constructor
#25
CWRU-CPB
closed
6 years ago
2
C converter crashes
#24
JB-MS
closed
6 years ago
9
Unspecific cleavage: question
#23
sgielis
closed
6 years ago
1
TMT 11 support ?
#22
lars20070
closed
6 years ago
1
Ambiguity in fasta files
#21
tivdnbos
closed
6 years ago
7
EtHCD data?
#20
wyu
closed
6 years ago
1
Phospho TMT protocol
#19
glormph
closed
6 years ago
2
mzML Parser Class Fails to Initialize
#18
mobiusklein
closed
6 years ago
5
Fragment mass tolerance using "Q-Exactive"
#17
Matthias313
closed
6 years ago
3
Why trypsin cleave C-term of methionine?
#16
bangjiehan
closed
6 years ago
1
Fix printUsageAndExit method typo
#15
Jong-hun-Park
closed
7 years ago
1
mzid conversion crashed
#14
JB-MS
closed
6 years ago
28
java.lang.NullPointerException when running MS-GF+
#13
RiegardtJohnson
opened
7 years ago
11
error while parsing fasta file
#12
timosachsenberg
closed
7 years ago
1
msgf+ reports different modification masses then specified
#11
adder
closed
7 years ago
2
MS-GF+ crashes for large FASTA files
#10
sampie
opened
7 years ago
21
Add a maximum allowed missed cleavages option?
#9
fcyu
closed
6 years ago
11
MS-GF:SpecEValue deterministic?
#8
adder
closed
7 years ago
1
mzid only partially valid for retention time reporting cv term entries
#7
mwalzer
closed
7 years ago
2
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