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MSGFPlus
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msgfplus
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
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MSGFPlus throws java.io.EOFException
#104
VladimirRoudko
closed
4 years ago
4
NullPointerException when specifying charge carrier mass
#103
ahoiching
closed
4 years ago
3
Question regarding running MSGF+ on all .mzML files in folder
#102
ttessie2
closed
4 years ago
6
Peptide identification for BioID samples
#101
ttessie2
closed
4 years ago
4
Why is MS-GF+ not giving the pepXML output file format?
#100
Jokendo-collab
opened
4 years ago
2
Check for decoy prefix when running target-only searches
#99
FarmGeek4Life
opened
4 years ago
0
Not sure if I'm running this correctly. All QValue and PepQValue are 0
#98
ttessie2
closed
4 years ago
12
Why is MS-GF not taking sequence database with already appended decoys sequences?
#97
Jokendo-collab
opened
4 years ago
3
The result of MS-GF+
#96
Golden-proteogenomics
opened
4 years ago
1
java 11 class not found problem
#95
bernt-matthias
opened
4 years ago
1
how to specify two enzymes
#94
liminghao663
closed
4 years ago
1
Theoretical spectrum generator
#93
CyberslavB
opened
4 years ago
1
Identical <SpectrumIdentificationItem>in mzid file
#92
pigeonwei
opened
4 years ago
1
Duplicate peptide elements with similar modifications
#91
glormph
closed
4 years ago
3
Number of peptides in E/p-value calculations
#90
mrForce
opened
4 years ago
1
Does score calculation for high-res spectra only uses certain ions?
#89
gsaxena888
opened
4 years ago
0
Is that correct PSMs is more than peptides in database.fasta.
#88
summerghw
opened
4 years ago
2
Request for semi-specific at N- or C-terminus only
#87
oliverschilling
opened
4 years ago
1
Wrong rank in the result
#86
KaiLiCn
opened
4 years ago
6
Why is my TMT ion intensity as same with each other
#85
zlq978983092
opened
4 years ago
2
Error in generating decoy files
#84
bjgprt
closed
4 years ago
4
Only consider +1 MS2 frag ions
#83
gsaxena888
opened
4 years ago
1
Request for TMT-16plex option
#82
progistar
opened
4 years ago
10
Request for a distributed-parallel support
#81
GeorgesBed
opened
4 years ago
2
how to "properly" train new scoring model
#80
gsaxena888
opened
4 years ago
5
splitting mgf into multiple files
#79
gsaxena888
opened
4 years ago
3
After removal of some sequences from db, no more matching _other_ sequences.
#78
glormph
opened
4 years ago
5
MS-GF+ search in SearchGUI failed
#77
AnkeTraut
opened
4 years ago
2
Error with invalid resiudes when running MSGF+
#76
heylookabed
opened
4 years ago
1
use non-0 exit code on failure
#75
cbielow
closed
4 years ago
2
Order of entries in FASTA input file affects EValues
#74
mrForce
opened
4 years ago
0
Read many input mgf files at one time
#73
dengchuanbio
closed
4 years ago
2
-maxMissedCleavages not showing in mzIdentML
#72
detritus
closed
4 years ago
3
Semi-specific sequences
#71
oliverschilling
opened
5 years ago
1
The newbie here cannot add a ConfigurationFile
#70
carlomartins
opened
5 years ago
3
(Question) Quantitative output
#69
meilumcdermott
closed
5 years ago
3
Missing userParams for some matches?
#68
mrForce
opened
5 years ago
1
Peptide Q-value less than PSM Q-value?
#67
mrForce
closed
4 years ago
2
Suffix instead of Prefix pattern for decoys
#66
tivdnbos
closed
5 years ago
3
Preferred way of analyzing mzid files
#65
tivdnbos
closed
5 years ago
3
Help: ms-gf + stuck at 0%
#64
GeorgesBed
opened
5 years ago
11
Fixes #62
#63
DennisGoldfarb
closed
5 years ago
2
getDeconvolutedSpectrum loses the last peak
#62
DennisGoldfarb
closed
5 years ago
1
mzid (tsv) -> idXML
#61
mash23
closed
5 years ago
1
p-value calculations in MSGF+?
#60
mrForce
opened
5 years ago
1
Global Configuration file supported.
#59
ypriverol
closed
5 years ago
1
protein decoy pattern parameter
#58
ypriverol
closed
5 years ago
8
Config file neeed
#57
ypriverol
closed
5 years ago
4
MSGF+ Training parameter location
#56
mrForce
closed
5 years ago
2
Spectral DAG model question
#55
mrForce
closed
5 years ago
11
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