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Martinsos
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edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
http://martinsos.github.io/edlib
MIT License
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infix (HW) mode
#122
srbehera
closed
5 years ago
2
Use nextflow to make edlib experiments reproducible.
#121
Martinsos
closed
4 years ago
1
Edlib hangs forever when query length is 0
#120
nmiculinic
closed
4 years ago
2
Adds basic implementation of the landau vishin prefix algorithm
#119
donikv
closed
4 years ago
6
Edlib for 1 vs N or N vs N
#118
Martinsos
opened
6 years ago
2
allow to take in bytes objects
#117
drmorr0
closed
6 years ago
8
request: scoring of indels
#116
rderelle
closed
6 years ago
1
optional parameter k not working properly
#115
rderelle
closed
6 years ago
6
Distance with special characters
#114
erikradisch
closed
6 years ago
3
Adding some level of parallelization to Edlib
#113
Martinsos
opened
6 years ago
2
Anaconda installation broken?
#112
meyermj
closed
6 years ago
5
Do alignment without mismatch?
#111
moold
closed
6 years ago
2
How to use word size is 256 bits data.
#110
stormalex
opened
6 years ago
1
Failure to align strings represented in Unicode (misleading results)
#109
xtknight
closed
6 years ago
4
Question about time complexity
#108
corwinjoy
closed
6 years ago
3
Fix testing of python binding on OSX (Travis CI)
#107
Martinsos
closed
3 years ago
2
Better define end and start locations and adjust implementation to that
#106
Martinsos
opened
6 years ago
0
Explain that Edlib is general edit distance library
#105
Martinsos
opened
6 years ago
0
Incorrect editDistance on russian cyrillic characters
#104
reefactor
closed
6 years ago
5
Edlib (sometimes) fails when none the characters of one seq1 are present in seq2
#103
iprada
closed
6 years ago
2
edlib installation fails in conda python if gcc not installed
#102
nextgenusfs
closed
6 years ago
21
Get suboptimal scores
#101
iprada
opened
6 years ago
2
enhance python API (want PR?)
#100
kurtbrose
opened
6 years ago
2
Allow bytestring arguments
#99
mahmoud
closed
4 years ago
2
Investigate diffbench and accompanying materials
#98
Martinsos
opened
6 years ago
0
Updated CMakeLists for easier project integration
#97
rvaser
closed
6 years ago
4
left-align?
#96
brentp
closed
6 years ago
3
Enable easier project inclusion with cmake
#95
rvaser
closed
6 years ago
2
Add windows command line support to aligner
#94
randrick
opened
6 years ago
3
Better explain start and end locations and possible alignments
#93
Martinsos
opened
6 years ago
3
option to not penalize gaps (or set higher penalty for gaps)
#92
daveuu
closed
6 years ago
6
Consider finishing computation if best score == 0
#91
Martinsos
opened
6 years ago
1
Make sequence more abstract, so it can be anything, not just array of chars.
#90
Martinsos
opened
6 years ago
8
edlib and unicode in python3
#89
christian-storm
closed
6 years ago
4
Add random tests for custom equality
#88
Martinsos
opened
6 years ago
2
Make appveyor pass
#87
Martinsos
closed
6 years ago
1
Segmentation fault
#86
edwardanderson
closed
6 years ago
3
seemingly random segmentation fault
#85
nextgenusfs
closed
6 years ago
10
Use smart pointers
#84
Martinsos
opened
7 years ago
3
start location using HW is None?
#83
nextgenusfs
closed
7 years ago
4
Degenerate nucleotides?
#82
nextgenusfs
closed
6 years ago
12
Overlap Alignments
#81
abiswas-odu
closed
7 years ago
1
Edlib and C (and C++)
#80
Martinsos
opened
7 years ago
2
Counts in cigar are off when sequences contain characters with diacritics
#79
jvdzwaan
closed
7 years ago
3
Idea: share working memory among edlibAlign() calls
#78
Martinsos
opened
7 years ago
3
Make Edlib faster for shorter sequences
#77
Martinsos
opened
7 years ago
7
Improve how testing is done
#76
Martinsos
opened
7 years ago
3
null pointer dereference and segfault in edlibAlign()
#75
geeknik
closed
7 years ago
2
segfault in edlibAlign()
#74
geeknik
closed
7 years ago
6
heap-buffer-overflow in transformSequences()
#73
geeknik
closed
7 years ago
1
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