issues
search
MesserLab
/
SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
https://messerlab.org/slim/
GNU General Public License v3.0
160
stars
30
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update README.md
#417
bryce-carson
closed
9 months ago
0
error adding individuals to table
#416
ShyamieG
closed
8 months ago
14
SLiM 4.1 release process
#415
bhaller
closed
9 months ago
29
Update README.md
#414
bryce-carson
closed
9 months ago
14
Use CMake to perform installation, and RPM macros
#413
bryce-carson
closed
9 months ago
2
Re-enable parallel SLiM
#412
bhaller
opened
9 months ago
0
RHEL 8 cluster, SLiMgui Segmentation fault; QOpenGLWidget: Failed to make context current, QOpenGLShaderProgram: could not create shader program
#411
SomePersonSomeWhereInTheWorld
closed
9 months ago
2
Added functions for extracting upper and lower triangles of matrices
#410
nobrien97
closed
9 months ago
9
Feature idea: calcNucleotideDiversity()
#409
singing-scientist
opened
9 months ago
7
Unable to close the population visualization graph generated by SLiMgui on Windows with WSL
#408
mustafacharoghi
closed
9 months ago
2
setConstraints() clashing with sexSegregation?
#407
jiseonmin
closed
10 months ago
4
tskit update to C_1.1.2
#406
petrelharp
closed
10 months ago
2
runtime error in setConstraints()?
#405
jiseonmin
closed
10 months ago
1
Potential memory leak of conda-forge slim 4.0.1
#404
bguo068
closed
10 months ago
5
Possible miscount in mutation reference tally with multiple subpopulations
#403
nobrien97
closed
10 months ago
4
generalize InteractionType sexSegregation to other restrictions
#402
bhaller
closed
10 months ago
4
remove edge table sorting if possible
#401
bhaller
opened
10 months ago
7
Tree sequences created by SLiM cannot be loaded with tskit
#400
vsbuffalo
closed
11 months ago
2
`pointDeviated` documentation
#399
jiseonmin
closed
10 months ago
9
allow out-of-bounds points from `pointDeviated`, optionally?
#398
petrelharp
closed
11 months ago
5
fix sampleNearbyPoint() and sampleImprovedNearbyPoint()
#397
bhaller
closed
11 months ago
5
possible issue in `sampleNearbyPoint`?
#396
petrelharp
closed
11 months ago
5
add SpatialMap class
#394
bhaller
closed
11 months ago
0
allow 'user_metadata' to be loaded with tree sequence when using readFromPopulationFile()
#393
ShyamieG
closed
11 months ago
3
Add Laplace distribution of fitness effects
#392
nobrien97
closed
10 months ago
12
note explaining current status of slim_id in population table
#391
petrelharp
closed
11 months ago
4
remove slim_id == population row requirement on reading in tree sequences?
#390
petrelharp
closed
11 months ago
1
add ability to draw from the 2d distribution whose cross-section is the t distribution
#389
petrelharp
closed
11 months ago
1
suggestion for description of drawByStrength()
#388
jiseonmin
closed
11 months ago
9
add a method of custom fitness calculations
#387
bhaller
opened
1 year ago
5
user-defined interaction kernels would be useful
#386
bhaller
opened
1 year ago
2
minor update to install docs for linux
#385
petrelharp
closed
11 months ago
3
method to choose a location nearby proportional to a map value
#384
petrelharp
closed
11 months ago
8
compile failure of `core/chromosome.cpp` on gcc 13.1.1
#382
clwgg
closed
1 year ago
6
simulation inscrutibly dies out
#381
petrelharp
closed
1 year ago
4
Smoothing of spatial maps
#380
petrelharp
closed
11 months ago
17
rank() function request
#379
ans6160
closed
1 year ago
5
make resizing text easier in GUI
#378
petrelharp
closed
1 year ago
1
[Feature Request] Creating gene/exon entries automatically via GFF3/GTF annotation files in nucleotide-based models
#377
conJUSTover
opened
1 year ago
5
Output a full ARG tree sequence
#376
kitchensjn
closed
1 year ago
3
Manual needs to be updated to reflect change of originTick to originGeneration
#375
jjberg2
closed
1 year ago
2
between-species interactions invalidated for species other than the first in reproduction()
#374
petrelharp
closed
1 year ago
1
Parallel reproduction
#372
bhaller
closed
1 year ago
0
"end of simulation" tick specification
#371
petrelharp
closed
1 year ago
3
SLiMgui prompts "This document has been modified" even though it hasn't
#370
petrelharp
closed
10 months ago
6
open and save file dialogs should start in working directory?
#369
petrelharp
closed
1 year ago
4
parallelize tree-sequence simplification
#368
bhaller
opened
1 year ago
1
Windows fix for RNG seeding needed
#367
bhaller
opened
1 year ago
8
"Total fitness <= 0.0" error loading population state - memory issue or something else?
#366
beaangelica
closed
1 year ago
5
Can't reload recapitated tree to SLiM
#365
TripleEmma
closed
11 months ago
16
Previous
Next