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ProbModelSEED
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fixing issue where PATRIC public API no longer takes tokens
#141
samseaver
closed
2 years ago
0
fixing contig pipeline
#140
samseaver
closed
4 years ago
0
Fixing SSL urls for some clients
#139
samseaver
closed
4 years ago
0
First pass for merging ObjectAPI from KBase to ProbModelSEED
#138
samseaver
closed
6 years ago
1
Post-workshop 2018 fixes
#137
samseaver
closed
6 years ago
0
Workshop 2018 fixes
#136
samseaver
closed
6 years ago
0
Updated type compilation with patric option
#135
samseaver
closed
6 years ago
0
Removing requirement for authentication with list_models
#134
samseaver
closed
6 years ago
0
Updates required to get blast genome to work again
#133
samseaver
closed
6 years ago
0
Fixing translation of local reaction refs
#132
samseaver
closed
7 years ago
0
Refactoring to specifically allow for blast of plant genome
#131
samseaver
closed
7 years ago
0
minimal_genome saving during save_feature
#130
samseaver
closed
7 years ago
0
Re-organizing to filter sims better
#129
samseaver
closed
7 years ago
0
Fixing bug
#128
samseaver
closed
7 years ago
0
Debugging loading of experiments and reconstructing models
#127
samseaver
closed
7 years ago
0
Commenting out delete command until further notice
#126
samseaver
closed
7 years ago
0
Fixing bugs in parsing media object
#125
samseaver
closed
7 years ago
0
Adding back initial constructing status
#124
samseaver
closed
7 years ago
0
Change sorting of reference plant models
#123
samseaver
closed
7 years ago
0
Fixing minor bug that generates a lot of warnings
#122
samseaver
closed
7 years ago
0
Fixing update of status messages and blast
#121
samseaver
closed
7 years ago
0
Removing stupidly catastrophic debugging things
#120
samseaver
closed
7 years ago
0
Fixing several bugs in model reconstruction process
#119
samseaver
closed
7 years ago
0
Fixed use of plant template for model reconstruction
#118
samseaver
closed
7 years ago
0
Updating plant_pipeline to use genome as json
#117
samseaver
closed
7 years ago
0
Minor change to avoid spamming logs with warning
#116
samseaver
closed
7 years ago
0
Updating changes to use of app_harness
#115
samseaver
closed
7 years ago
0
Tweaking get_feature and save_feature_function
#114
samseaver
closed
7 years ago
0
Extending options for plant_pipeline
#113
samseaver
closed
7 years ago
0
Discrepancy between Reaction biochemistry table and reactions upon reconstruction
#112
ctseto
opened
7 years ago
4
Template selection during model reconstruction
#111
ctseto
opened
7 years ago
4
Bugfix/probanno
#110
mmundy42
closed
7 years ago
0
Minor fixes for reaction likelihoods
#109
mmundy42
closed
7 years ago
0
Removing unnecessary FROMJSON() from two plantseed functions
#108
samseaver
closed
7 years ago
0
Merging blast function with dev
#107
samseaver
closed
8 years ago
0
Adding fix for expseries to FluxBalanceAnalysis
#106
samseaver
closed
7 years ago
1
Updating modelfolder metadata
#105
samseaver
closed
8 years ago
0
Fixing list_models as well as other stuff
#104
samseaver
closed
8 years ago
2
Merging kmer annotation function for deployment
#103
samseaver
closed
8 years ago
0
Merging function fo uploading expression data
#102
samseaver
closed
8 years ago
0
Merging for production deployment of file upload
#101
samseaver
closed
8 years ago
0
Dev
#100
samseaver
closed
8 years ago
0
Issues with reconstruction on custom media
#99
nconrad
opened
8 years ago
0
Updating media options to be strings
#98
samseaver
closed
8 years ago
0
adding plantseed_home_dir() function in config.pm
#97
samseaver
closed
8 years ago
0
Finish probanno
#96
mmundy42
closed
8 years ago
3
Issues with copy_model
#95
nconrad
opened
9 years ago
1
Merge master to dev to get back in sync
#94
mmundy42
closed
9 years ago
0
Merge latest from dev branch to master branch
#93
mmundy42
closed
9 years ago
0
adding compartment search for models
#92
samseaver
closed
9 years ago
0
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