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NBISweden
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AGAT
Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
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Can't call method "has_tag" on an undefined value at /home/students/q.abbas/perl5/lib/perl5/AGAT/OmniscientTool.pm line 1267.
#352
qussai96
closed
1 year ago
4
fix #347, update end location only if longest
#351
Juke34
closed
1 year ago
0
Exonerate gff conversion error with AGAT
#350
davidcoolman
closed
1 year ago
0
Probles installing agat from conda
#349
DiegoSafian
closed
1 year ago
1
Remove inappropriate tags while create L2 or L1 feature frome low level feature
#348
ghost
closed
1 year ago
2
agat_sp_keep_longest issue in adding exon feature
#347
jeankeller
closed
1 year ago
2
Race conditions with `config.yml`
#346
kdm9
closed
1 year ago
3
Can't call method "end" on an undefined value at agat_convert_sp_gff2gtf.pl line 339.
#345
Rafaelsoler13
closed
1 year ago
1
Index Error retriving transcript
#344
Harper75
closed
1 year ago
3
gff2 to gff3 converter ?
#343
colindaven
closed
1 year ago
2
Conda install
#342
ndeimler99
closed
1 year ago
15
agat_sp_filter_feature_from_keep_list.pl outputs an unfiltered gff
#341
EinarBaldvin
closed
1 year ago
3
failing to run busco support_protocol3 probably because agat does not like GFF files
#340
JoseLopezArcondo
closed
1 year ago
6
agat_sp_manage_functional_annotation.pl
#339
DiegoSafian
closed
1 year ago
1
agat_sp_keep_longest_isoform.pl can't open GFF file, Installed with Docker
#338
SidG13
closed
1 year ago
4
fix #290 GeMoMA peculiar case with L3 attached to L1 while L2 exists …
#337
Juke34
closed
1 year ago
0
fix #315 add skip_merge_l3 in feature_levels yaml file to handle whic…
#336
Juke34
closed
1 year ago
0
fix #325 and add test to use with agat_sp_merge_annotations. Rename f…
#335
Juke34
closed
1 year ago
0
add a check in OmniscientI check_identical_loci
#334
Juke34
opened
1 year ago
0
fix #327 - avoid crash if CDS less than 3 nt
#333
Juke34
closed
1 year ago
0
Handle IDs
#332
Juke34
closed
1 year ago
0
agat convert gff to gtf produces duplicate transcript ID
#331
ericmalekos
closed
1 year ago
3
Issue installing with bioconda
#330
ericmalekos
closed
1 year ago
2
AGAT created non-unique IDs
#329
dirkjanvw
closed
1 year ago
6
Extract 2kb upstream of tss of list of genes
#328
zinchosyang
closed
1 year ago
1
Bad end parameter.
#327
fangbohao
closed
1 year ago
8
agat_sp_merge_annotations.pl fails to merge?
#325
dariober
closed
1 year ago
2
STDOUT print when --output file is defined
#324
alexandre-jf-fernandes
closed
1 year ago
2
Doc again
#323
Juke34
closed
1 year ago
0
Perl error after agat installation
#322
Nivskrishnan05
closed
1 year ago
1
Access file within container - docker - agat_convert_sp_gxf2gxf.pl GFF file doesn't exist when it does?
#321
Floyd1229
closed
1 year ago
2
Empty gff output when running agat_sp_compare_two_BUSCOs.pl
#320
smorzechowski
closed
1 year ago
4
Update doc
#319
Juke34
closed
1 year ago
0
agat_sp_manage_functional_annotation.pl "freezing"
#318
Jokendo-collab
closed
1 year ago
3
GTF/GFF 5' & 3' UTR
#317
aabaricalla
closed
1 year ago
1
WARNING: Problem ! no sequence extracted for - <seq_id> ! (agat_sp_extract_sequences.pl)
#316
FrancescoGarassino
closed
1 year ago
2
Unexpected behavior when applying agat_convert_sp_gxf2gxf.pl to uORFs
#315
svigneau
closed
1 year ago
3
GFF to GTF conversion: Stop codon not removed in general
#314
eboileau
closed
1 year ago
2
Make test
#313
kbipinkumar
closed
1 year ago
4
"Prerequisite JSON 0 not found"
#312
kbipinkumar
closed
1 year ago
3
Specify which attributes to keep.
#311
mossconfuse
closed
1 year ago
2
agat statistics enhancement request
#307
sanyalab
closed
2 months ago
2
the Script ‘agat_convert_sp_gxf2gxf.pl’ has no the parameter '--ct',but the docs showed the '--ct'
#306
z626093820
closed
1 year ago
7
add new script agat_sq_rename_seqid.pl. Fix #300
#305
Juke34
closed
2 years ago
0
Multiple quoted entries for a single attribute
#304
mossconfuse
closed
1 year ago
1
Revise gfx doc for clarity
#303
zacharyzollman
closed
2 years ago
3
fix #297 update functional statistics
#302
Juke34
closed
2 years ago
0
Can agat convert a gff to bed format and retain thickStart and thickEnd of non coding RNAs
#301
loukesio
closed
2 years ago
3
change the chromosome name of the gff3 file
#300
tiramisutes
closed
2 years ago
0
agat_sp_extract_sequences.pl not extracting full gene
#299
jdamas13
closed
2 years ago
1
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