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NBISweden
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AGAT
Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
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Extracting Coordinates by Tag/Tags in GFF File
#404
MeHelmy
closed
9 months ago
2
fix #389
#403
Juke34
closed
1 year ago
0
fix #383
#402
Juke34
closed
1 year ago
0
Possible tabular format for agat_sp_statistics.pl
#401
KristinaGagalova
closed
5 months ago
2
Keep records based on canonical transcript ID
#400
jahemker
closed
5 months ago
1
Failed installation conda
#399
amv33576
closed
1 year ago
3
Can AGAT `agat_convert_sp_gff2gtf.pl` add transcript_type tag when converting GFF3 to GTF
#398
Rohit-Satyam
closed
10 months ago
2
Problems with installation and usage via Docker and Singularity
#397
Carolinacanettieri
closed
9 months ago
5
MSG: '-2' is not a valid frame
#396
Ellenski
closed
1 year ago
7
------------ EXCEPTION: Bio::Root::Exception ------------- MSG: Failed validation of sequence '1'. Invalid characters were: '''
#395
Psedhai
closed
1 year ago
1
Semi-manual installation of AGAT fails most installation tests
#394
pzit0
closed
11 months ago
3
Turning off the GFF3 parser
#393
sanyalab
closed
1 year ago
2
AGAT compatible with Perl 5.36 ?
#392
eylenth
opened
1 year ago
8
A little bug -- word spelling mistake
#391
wang-wldlsw
closed
1 year ago
1
agat_sp_manage_functional_annotation.pl empty output
#390
isnmn
closed
1 year ago
3
Possible bug (v1.0 and 1.2)
#389
robertewhite
closed
1 year ago
4
Removing premature stop codons from gff
#387
romseg
closed
1 year ago
1
Tiny bug - gtf output header
#386
SheepwormJM
opened
1 year ago
2
Creating and deleting the same entries?
#385
SheepwormJM
closed
1 year ago
2
Clean_clone
#384
Juke34
closed
1 year ago
0
Can't "continue" outside a when block at /home/lege/anaconda3/envs/agat/bin/agat_convert_sp_gff2bed.pl line 189.
#383
alexvasilikop
closed
1 year ago
2
add a new script to add Intergenic region features
#382
Juke34
closed
1 year ago
0
add a new script to annotate splice sites from CDS
#381
Juke34
closed
1 year ago
0
Avoid seq_id 0 to be replaced by default SEQ value
#380
Juke34
closed
1 year ago
0
Input / output _sq_ _sp_ homogenized
#379
Juke34
closed
1 year ago
0
bug in agat_sq_add_attributes_from_tsv.pl
#378
Juke34
closed
1 year ago
4
add test for renaming agat config file
#377
Juke34
closed
1 year ago
0
Config file can now be called as you wish and located where you want
#376
Juke34
closed
1 year ago
0
Version
#375
Juke34
closed
1 year ago
0
remove JSON fix #312
#374
Juke34
closed
1 year ago
0
Version issue with v1.1.0 conda/biocontainer builds
#373
jmrussell
closed
1 year ago
1
How to fix wrong input gff3 file format
#372
romseg
closed
1 year ago
5
agat_convert_embl2gff.pl cannot use --throw_fasta
#371
JohnnyChen1113
closed
1 year ago
1
agat_sp_filter_feature_from_keep_list.pl keeps all mRNA records instead of just the selected
#370
sanyalab
closed
1 year ago
1
feature_levels: add missing pseudogenic SOFA L2/L3 terms
#369
kdm9
closed
1 year ago
1
Chromosome "0" becomes "SEQ"
#368
sivasubramanics
closed
1 year ago
1
Work on sp_statistics. fix mispelling, clean output, skip useless sta…
#367
Juke34
closed
1 year ago
0
agat_convert_sp_gxf2gxf.pl on ncbi gff file generating "nbis-gene-xx" genes
#366
mossconfuse
closed
1 year ago
5
agat_convert_minimap2_bam2gff.pl save AS information in score instead of phase.
#365
Juke34
closed
1 year ago
0
Issue agat_convert_minimap2_bam2gff.pl
#363
EglantineMB
closed
1 year ago
15
EXCEPTION - MSG: Each line of the file must be less than 65,536 characters
#362
alexvasilikop
closed
1 year ago
1
exon and UTR checks without fasta
#361
alexvasilikop
closed
1 year ago
4
agat_sp_fix_longest_ORF.pl fails to produce gff
#360
r-mashoodh
closed
5 months ago
7
agat_sp_fix_overlaping_genes.pl does not seem to complete
#359
sanyalab
closed
1 year ago
5
The output file is bigger than input gff
#358
ShirelyI
closed
1 year ago
1
add genetic code selection to agat_sp_extract_sequences.pl
#357
JWDebler
closed
1 year ago
1
extract fasta for the longest possible transcript for each gene model
#356
splaisan
closed
1 year ago
1
Fix #352 - do not check feature when already removed
#355
Juke34
closed
1 year ago
0
fix #350
#354
Juke34
closed
1 year ago
0
Version display
#353
Juke34
closed
1 year ago
0
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