NBISweden MrBayes issues

NBISweden / MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

http://NBISweden.github.io/MrBayes/

GNU General Public License v3.0

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issues

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stratified total evidence tip dating analysis

#255 evolucionario opened 2 years ago
2
"Building the Beagle library for MrBayes" section in MrBayes' Linux installation instructions is outdated

#254 caaguado closed 2 years ago
1
Single threads or Multitheads??

#253 kuangtianhui opened 3 years ago
1
Questions about estimation of the average standard deviation of split frequencies

#252 danielyao12 opened 3 years ago
1
Autotune feature for the rjMCMC clock models

#251 zhangchicool closed 3 years ago
0
Prior distribution of independent lognormal clock model is wrong

#250 zhangchicool closed 3 years ago
1
Error in execution

#249 siddharthk02 closed 3 years ago
3
Unable te install MrBayes on Apple M1 from source

#248 vresbok closed 3 years ago
3
MrBayes Stepping-stone analysis error: DEBUG ERROR: Log likelihood nan after move 'Slider(Ratemultiplier{all})'

#247 KirtOnthank opened 3 years ago
1
Molecular Clock Dating

#246 francicco closed 3 years ago
1
The average standard deviation of split frequencies

#245 jojobmz closed 3 years ago
2
sumt command error

#244 prasupad closed 8 months ago
2
Average standard deviation bellow 0.01 but many ESS values are below 200?

#243 ypchan closed 3 years ago
1
compiler warnings

#242 zhangchicool closed 1 year ago
2
Unable te install MrBayes on Apple M1 hardware (arm CPU issue?)

#241 kusalananda closed 3 years ago
3
URGENT: Need more info: Ancestral sequence reconstruction

#240 LysSanzMoreta closed 8 months ago
3
srun: error: mpi/pmi2: invalid tree req command

#239 Menglinhsy opened 3 years ago
0
Inferring site rates

#238 PhyloStar opened 3 years ago
2
Spaces in file pathway will not allow me to open file

#237 kbq2 opened 3 years ago
1
Use readline to allow command history

#236 ftyers closed 3 years ago
1
To obtain absolute dates (from current date)

#235 Alexei-Kassian opened 3 years ago
1
unlink kmixture rate models

#234 onmikula closed 3 years ago
1
MrBayes ignoring hard constraints even when treeagepr and prset topologypr=constraints in place

#233 Emtroyer opened 3 years ago
2
Contype problem for phylogram

#232 jdirish1 opened 3 years ago
0
Cannot specify amino acid substitution rate higher than 1000

#231 roomfortwo opened 3 years ago
0
Calculation hangs on model with partition

#230 ante-turudic opened 3 years ago
2
Issue with covarion model ("CIPRES-bug")

#229 nylander opened 3 years ago
0
Bug while executing my .nex file

#228 Deisiany closed 3 years ago
1
MrBayes locks file after run complete, leading to error `Could not rename file NEXUSFILE.nex.run1.t`

#227 ms609 opened 3 years ago
0
Misreporting of error position in mb3.2.7 [regression from 3.2.6]

#226 ms609 opened 3 years ago
0
Root state in restriction dataset

#225 ghost opened 3 years ago
0
Update Manual_MrBayes_v3.2.tex

#224 pablovaldes closed 3 years ago
0
Update Manual_MrBayes_v3.2.tex

#223 pablovaldes closed 3 years ago
0
Update Manual_MrBayes_v3.2.tex

#222 pablovaldes closed 3 years ago
1
Update Manual_MrBayes_v3.2.tex

#221 pablovaldes closed 3 years ago
0
Branch lengths of time trees

#220 ronquist opened 3 years ago
0
Update bioconda recepie

#219 nylander opened 4 years ago
0
Gamma parameter less than zero (also relates to #161 “Log likelihood gets stuck”)

#218 roussine opened 4 years ago
0
mpirun slowdown in virtualbox (not a bug)

#217 roussine closed 3 years ago
3
Issue with relaxed clock analyses using fossil data only

#216 ghost opened 4 years ago
2
WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow

#215 473021677 opened 4 years ago
2
clock:birthdeath and clock:coalescence with dated tips should give an error

#214 zhangchicool opened 4 years ago
1
Variable 'j' may be uninitialized when used here

#213 zhangchicool closed 1 year ago
2
Feature/tap tests

#212 kusalananda closed 4 years ago
0
Minimal example does not run

#211 Anaphory opened 4 years ago
1
How to get a XXX% majority rule tree?

#210 Alexei-Kassian opened 4 years ago
1
Feature/issue 58

#209 ronquist closed 4 years ago
0
Initialized interiorRoot to NULL to silence compiler warnings

#208 ronquist closed 4 years ago
0
Explicit type conversions to ensure clean compile

#207 ronquist closed 4 years ago
0
Revert "Manual"

#206 kusalananda closed 4 years ago
1

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