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NCBI-Hackathons
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NovoGraph
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
MIT License
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Configuring tzdata stops with this interactive dialog
#42
HediaTnani
closed
3 years ago
2
Fix to job array edge case
#41
evanbiederstedt
closed
3 years ago
2
qsub default off
#40
evanbiederstedt
closed
4 years ago
1
running BAM2MAFFT. public.q issue
#39
SAMtoBAM
closed
3 years ago
15
Died at ../../../NovoGraph-1.0.0/scripts/BAM2ALIGNMENT.pl line 246.
#38
SAMtoBAM
closed
4 years ago
3
enhancement: disk space improvement
#37
TorHou
closed
4 years ago
0
sam2alignment aborted
#36
Boer223
closed
4 years ago
15
BUGFIX: This resolves a corner case.
#35
TorHou
closed
4 years ago
1
Modularize msa and bam generation
#34
TorHou
closed
4 years ago
6
update CRAM2VCF_createFinalVCF.pl
#33
TorHou
closed
3 years ago
1
Genotyping script
#32
TorHou
closed
4 years ago
2
Remove Bio::DB::HTS from countExpectedGlobalAlignments.pl
#31
evanbiederstedt
closed
4 years ago
1
improvement/better parsing
#30
TorHou
closed
4 years ago
1
revised README, added Dockerfile
#29
evanbiederstedt
closed
4 years ago
0
Remove Bio::DB::HTS
#28
evanbiederstedt
closed
4 years ago
2
Update amendSecondaryAlignmentSequences.pl
#27
TorHou
closed
4 years ago
1
Remove Bio::DB::HTS; update CRAM2VCF_checkVariantDistribution.pl
#26
TorHou
closed
4 years ago
1
added parameter specifying max. number processes run
#25
evanbiederstedt
closed
4 years ago
1
Splitting is necessary for assemblies with long stretches of N becaus…
#24
TorHou
closed
4 years ago
2
CRAM2VCF.cpp needs a lot of memory
#23
TorHou
opened
4 years ago
1
If the user sets the output's suffix to something different than .sam…
#22
TorHou
closed
4 years ago
1
Is it possible to get the contig list for VCF records?
#21
JYLeeBioinfo
closed
4 years ago
2
CALLMAFFT.pl with --qsub 1
#20
TorHou
closed
3 years ago
3
Added support for TORQUE (open source PBS):
#19
nhansen
closed
5 years ago
1
CALLMAFFT.pl for torque6.1.12
#18
JYLeeBioinfo
closed
5 years ago
6
Issues with alignment processing
#17
RenzoTale88
closed
5 years ago
6
Genomes other than human
#16
gbdias
closed
5 years ago
1
bsub for CALLMAFFT.pl
#15
christinawu2008
opened
5 years ago
1
could not find `dealWithTooManyCIGAROperations.pl`
#14
iwangtoknow
closed
6 years ago
3
MetaNWAlgo Pipeline
#13
aartijajoo88
closed
6 years ago
1
Name all the things
#12
evanbiederstedt
closed
6 years ago
8
CSHL graph genome talk
#11
evanbiederstedt
closed
6 years ago
2
parsedAlternates error on vg call
#10
jcoliver
closed
6 years ago
4
vg call throwing error from tabix
#9
jcoliver
closed
7 years ago
2
re-parallelize the MAFFT layer
#8
nathandunn
closed
6 years ago
0
remove unnecessary copy operation
#7
nathandunn
closed
6 years ago
0
JGA---convert into Cython, and then add into pipeline
#6
evanbiederstedt
closed
6 years ago
0
Samples argument for vcf2bam
#5
jcoliver
closed
6 years ago
3
Bam to vcf
#4
ajo2995
closed
7 years ago
0
Multiple Sequence Alignment tool?
#3
jcoliver
closed
7 years ago
1
Create optimal window "size" algorithm
#2
evanbiederstedt
closed
6 years ago
0
bam to vcf converter
#1
ajo2995
closed
7 years ago
0