issues
search
NCI-RBL
/
iCLIP
RNA Biology Pipeline to Characterize protein-RNA Interactions
https://rbl-nci.github.io/iCLIP/
MIT License
4
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add include rRNA to params
#52
slsevilla
closed
3 years ago
1
Active dev
#51
slsevilla
closed
3 years ago
0
redirect tmp dir from java
#50
slsevilla
closed
3 years ago
1
Active dev
#49
slsevilla
closed
3 years ago
0
Merge pull request #47 from RBL-NCI/main
#48
slsevilla
closed
3 years ago
0
merge main to activeDev
#47
slsevilla
closed
3 years ago
0
incorporate MANorm outputs into snakemake
#46
slsevilla
closed
3 years ago
1
incorporate expanded annotation into snakemake
#45
slsevilla
closed
3 years ago
1
Active dev
#44
slsevilla
closed
3 years ago
0
consolidate library list
#43
slsevilla
closed
3 years ago
1
change file structure after adaptor removal
#42
slsevilla
closed
3 years ago
1
create functions for various annotation outputs
#41
slsevilla
closed
3 years ago
1
rename variables MD11_BW
#40
slsevilla
closed
3 years ago
1
fix feature count file naming
#39
slsevilla
closed
3 years ago
1
merge if statements in MD11_BW
#38
slsevilla
closed
3 years ago
1
handle hardcoding in peak files
#37
slsevilla
closed
3 years ago
2
error checking of user parameters in peak files
#36
slsevilla
closed
3 years ago
2
remove unused code from peak files
#35
slsevilla
closed
3 years ago
1
Merge sort and index rules
#34
slsevilla
closed
3 years ago
1
User parameters for peak calling
#33
slsevilla
closed
3 years ago
1
Manifest dir
#32
slsevilla
closed
3 years ago
1
Commit peak calling code
#31
slsevilla
closed
3 years ago
1
use relative paths within pipeline
#30
slsevilla
closed
3 years ago
1
user parameter for barcode mismatch
#29
slsevilla
closed
3 years ago
1
use envmodules, control versions
#28
slsevilla
closed
3 years ago
0
entry into pipeline for non multiplexed samples
#27
slsevilla
closed
3 years ago
1
Active dev
#26
slsevilla
closed
3 years ago
0
add peak calling for multimapped and mm/unique files
#25
slsevilla
closed
3 years ago
2
Add Percent Ribosomal alignment
#24
slsevilla
closed
3 years ago
1
Add FASTQ Screen
#23
slsevilla
closed
3 years ago
1
MultiQC report after trimming
#22
slsevilla
closed
3 years ago
1
Add QC for barcodes
#21
slsevilla
closed
3 years ago
1
expand annotation file
#20
slsevilla
closed
3 years ago
1
fix awk bug
#19
slsevilla
closed
3 years ago
0
merge activeDev
#18
slsevilla
closed
3 years ago
0
eCLIP branch
#17
slsevilla
closed
1 year ago
1
remove unique/multimap split before deduplication
#16
slsevilla
closed
3 years ago
1
splice aware flag in bedtools merge
#15
slsevilla
closed
3 years ago
1
error handling of split_value
#14
slsevilla
closed
3 years ago
1
v0.3
#13
slsevilla
closed
3 years ago
0
activeDev merge
#12
slsevilla
closed
3 years ago
0
remove temp_files
#11
slsevilla
closed
3 years ago
1
error handling of source_dir
#10
slsevilla
closed
3 years ago
1
update sbatch id's
#9
slsevilla
closed
3 years ago
1
count_peaks feature
#8
slsevilla
closed
3 years ago
1
spliceaware feature
#7
slsevilla
closed
3 years ago
1
split_file parameters
#6
slsevilla
closed
3 years ago
1
activeDev merge
#5
slsevilla
closed
3 years ago
0
Estimating Duplication
#4
kopardev
opened
3 years ago
1
v0.1
#3
slsevilla
closed
3 years ago
0
Previous
Next