issues
search
NCI-RBL
/
iCLIP
RNA Biology Pipeline to Characterize protein-RNA Interactions
https://rbl-nci.github.io/iCLIP/
MIT License
4
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
test task #1
#102
kopardev
closed
2 years ago
0
add --temp-dir option to umitools dedup
#101
kopardev
opened
2 years ago
0
samtools stats
#100
kopardev
closed
2 years ago
1
Increasing tmpdir and walltimes
#99
skchronicles
closed
2 years ago
0
Merging new v1.1 features and fixes
#98
skchronicles
closed
2 years ago
0
Adding Dockerfile for custom iCLIP version
#97
skchronicles
closed
2 years ago
0
Increasing allocated memory and walltime requirements due to repeated…
#96
skchronicles
closed
2 years ago
0
Active dev
#95
slsevilla
closed
2 years ago
0
Create uninitialized output parent directories and updating she-bang for cross platform compatibility
#94
skchronicles
closed
2 years ago
0
output differences between runs
#93
slsevilla
closed
2 years ago
3
Incorporate DIFFBIND into Pipeline
#92
slsevilla
closed
2 years ago
6
Add contrast confirmation to -p check
#91
slsevilla
closed
3 years ago
1
Convert barcode QC script
#90
slsevilla
closed
3 years ago
1
improve config checks
#89
slsevilla
closed
3 years ago
2
update testing inputs for git action
#88
slsevilla
closed
3 years ago
1
add FASTQ Validator to workflow
#87
slsevilla
closed
3 years ago
1
split file parameter
#86
slsevilla
closed
3 years ago
1
alignment optimization
#85
slsevilla
closed
3 years ago
3
QC report error
#84
slsevilla
closed
3 years ago
1
improve statistic reporting / log, config structure (master issue)
#83
slsevilla
closed
3 years ago
2
optimize pipeline resources (master issue)
#82
slsevilla
closed
2 years ago
1
KO sample errors
#81
slsevilla
closed
3 years ago
3
sam_tools_cleanup: AUX error
#80
slsevilla
closed
3 years ago
1
v0.6
#79
slsevilla
closed
3 years ago
0
Active dev
#78
slsevilla
closed
3 years ago
0
remove 150bp index
#77
slsevilla
closed
3 years ago
1
expand number of barcodes taken as input
#76
slsevilla
closed
3 years ago
1
update cluster config
#75
slsevilla
closed
3 years ago
1
Create indices for new alignment strategies
#74
slsevilla
closed
2 years ago
3
MAPQ correction implementation
#73
kopardev
closed
2 years ago
8
integrate new alignment strategy for MAPQ score calculation
#72
slsevilla
closed
3 years ago
1
Active dev
#71
phoman14
closed
3 years ago
0
Incorporate unmapped reads into output BAM
#70
slsevilla
closed
3 years ago
1
Quality mapping score recalculation
#69
slsevilla
closed
3 years ago
1
G-quadraplexes integration
#68
slsevilla
closed
1 year ago
3
Complete merger of MANORM script into Snakemake pipeline
#67
slsevilla
closed
3 years ago
3
Complete merger of annotations script into Snakemake pipeline
#66
slsevilla
closed
3 years ago
12
update singularity version
#65
slsevilla
closed
3 years ago
1
make files in /container/ dir accessible
#64
slsevilla
closed
3 years ago
1
archive Snakefile and run from archive
#63
slsevilla
closed
3 years ago
1
determine impact of flags in novoalign
#62
slsevilla
closed
2 years ago
3
add version of pipeline in config
#61
slsevilla
closed
3 years ago
1
rename sbatch files to help with troubleshooting
#60
slsevilla
closed
3 years ago
1
dedup error - umi's of different length
#59
slsevilla
closed
3 years ago
4
include output of unmapped reads
#58
slsevilla
closed
3 years ago
5
split file error handling
#57
slsevilla
closed
3 years ago
1
create a consolidated error handling report
#56
slsevilla
closed
3 years ago
1
add arg parse to R scripts
#55
slsevilla
closed
3 years ago
1
standardize ggplots
#54
slsevilla
closed
3 years ago
0
remove illegal characters from bed
#53
slsevilla
closed
3 years ago
2
Previous
Next