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NVIDIA-Genomics-Research
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AtacWorks
Deep learning based processing of Atac-seq data
https://clara-parabricks.github.io/AtacWorks/
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Removing batch bias
#252
liqing9102
opened
1 month ago
0
Error: `torch.cuda.OutOfMemoryError: CUDA out of memory`
#251
rrchai
closed
10 months ago
1
PermissionError: [Errno 13] Permission denied: 'bedGraphToBigWig'
#250
AbbyQiayi
opened
1 year ago
0
Could not find a version that satisfies the requirement torchvision==0.3.0 (from atacworks)
#249
skr3178
opened
1 year ago
0
Error running atacworks train
#248
albertdyu
opened
2 years ago
2
Tutorial 1 is recursive?
#247
albertdyu
opened
2 years ago
1
ConnectionResetError: [Errno 104] Connection reset by peer
#246
hhvu0102
opened
2 years ago
0
Removing hard-set versions from requirements.txt to be more compatible with RAPIDS
#245
cjnolet
opened
3 years ago
2
error message needing help
#244
elffairy90
opened
3 years ago
1
mouse reference genome
#243
elffairy90
closed
3 years ago
1
[gpuCI] Forward-merge master to dev-v0.4.0
#242
GPUtester
opened
3 years ago
1
Update Requirements.txt - master branch
#241
ohadmo
closed
3 years ago
0
Update dependencies
#240
ntadimeti
closed
3 years ago
0
mouse reference
#239
elffairy90
closed
3 years ago
2
Update requirements.txt
#238
ntadimeti
closed
3 years ago
2
Atacworks stuck at "waiting for writter to finish..."
#237
rochevin
opened
3 years ago
3
Pretrained model for bulk low-quality data
#236
avantikalal
opened
3 years ago
6
What does the 6 kb mean?
#235
YichaoOU
opened
3 years ago
3
Update citation
#234
avantikalal
closed
3 years ago
0
error in pip install -r requirments.txt
#233
elffairy90
opened
3 years ago
1
Error when passing directories for training
#232
plantformatics
closed
3 years ago
1
WIP: Enable reading config files output by atacworks
#231
ntadimeti
opened
3 years ago
1
WIP: Combine tile functions in utils.py
#230
ntadimeti
closed
3 years ago
1
Sort the files in dir to ensure paired readings
#229
ntadimeti
closed
3 years ago
1
name h5 file based on noisybw instead of cleanbw
#228
ntadimeti
closed
3 years ago
3
WIP: Update versions of all dependencies
#227
ntadimeti
opened
3 years ago
1
Update scikit-learn version
#226
ntadimeti
closed
3 years ago
0
Update atacworks dependencies to scikit-learn 0.23.2
#225
avantikalal
closed
3 years ago
1
Add rapids atacworks example
#224
ntadimeti
closed
3 years ago
0
Update atacworks dependencies to latest stable versions
#223
ntadimeti
opened
3 years ago
0
Update documentation
#222
ntadimeti
closed
3 years ago
0
AtacWorks errors on custom data
#221
asundaresan1
closed
3 years ago
15
[gpuCI] Auto-merge master to dev-v0.4.0 [skip ci]
#220
GPUtester
closed
3 years ago
1
Soften the requirements
#219
ntadimeti
closed
3 years ago
0
Add compatibility version specifier
#218
ntadimeti
closed
3 years ago
1
h5 file naming
#217
avantikalal
closed
3 years ago
0
files not read in sorted order
#216
ntadimeti
closed
3 years ago
0
fix evaluation
#215
ntadimeti
closed
4 years ago
0
Fix batch size arg
#214
ntadimeti
closed
4 years ago
0
Version promotion scripts for automatic release job
#213
ohadmo
closed
4 years ago
0
atacworks inference getting stuck at writing stage
#212
ntadimeti
closed
3 years ago
0
scanpy installation conflicts with atacworks
#211
ntadimeti
closed
3 years ago
0
Fix release version
#210
ntadimeti
closed
4 years ago
2
Add unit tests for data loader
#209
ntadimeti
closed
4 years ago
1
Fix train dataloader
#208
ntadimeti
closed
4 years ago
0
In training, same sample is being stored per batch.
#207
ntadimeti
closed
4 years ago
0
Update defaults
#206
avantikalal
closed
4 years ago
0
Add new docker instructions
#205
ntadimeti
closed
4 years ago
3
Fix wheel package location
#204
ntadimeti
closed
4 years ago
0
Merge dev-v0.3.0 to master
#203
ntadimeti
closed
4 years ago
1
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