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Nelly-Barret
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BETTER-fairificator
The fairification tools for BETTER project.
https://www.better-health-project.eu/
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constants for Config + default DB name
#33
Nelly-Barret
closed
3 weeks ago
0
Generate FHIR profiles from Python classes? (not Python classes from FHIR profiles)
#32
Nelly-Barret
opened
3 weeks ago
2
Use cosntants for config sections and keys
#31
Nelly-Barret
closed
3 weeks ago
1
set default DB name + db name for tests
#30
Nelly-Barret
closed
3 weeks ago
0
Set default db name is none is provided
#29
Nelly-Barret
closed
3 weeks ago
1
Propose a first catalog
#28
Nelly-Barret
opened
3 weeks ago
5
Test existing catalogs
#27
Nelly-Barret
closed
1 week ago
2
Add new data to the database + rollback
#26
Nelly-Barret
opened
3 weeks ago
2
Fix 23
#25
Nelly-Barret
closed
3 weeks ago
0
PyMongo is broken
#24
Nelly-Barret
closed
3 weeks ago
6
Save the logs in a file
#23
Nelly-Barret
closed
3 weeks ago
1
Document the code
#22
Nelly-Barret
opened
3 weeks ago
0
Create my proper Config class leveraging configParser
#21
Nelly-Barret
closed
3 weeks ago
0
Create a Config class to be able to create it also from tests
#20
Nelly-Barret
closed
3 weeks ago
1
What if a single patient has different values for a given phenotypic variable?
#19
Nelly-Barret
opened
3 weeks ago
0
Add parameters to README
#18
Nelly-Barret
opened
3 weeks ago
0
only keep the needed metadata (hospital, dataset)
#17
Nelly-Barret
closed
3 weeks ago
0
system settings in parameters.ini
#16
Nelly-Barret
closed
3 weeks ago
0
Fix 13
#15
Nelly-Barret
closed
3 weeks ago
0
Fix 8 and 11
#14
Nelly-Barret
closed
3 weeks ago
0
Create a script to create the Python environment, create the working dir and run the script
#13
Nelly-Barret
closed
3 weeks ago
4
Create more dataframes with only the needed columns
#12
Nelly-Barret
closed
3 weeks ago
1
Separate transform from load in the ETL
#11
Nelly-Barret
closed
3 weeks ago
2
Two columns in the metadata do not correspond to the data columns names
#10
Nelly-Barret
opened
4 weeks ago
0
Split metadata file into several if it contains metadata about several hospitals
#9
Nelly-Barret
closed
3 weeks ago
2
Insert/retrieve Resource instances in/from the database
#8
Nelly-Barret
opened
1 month ago
5
CI/CD does not find the `utils` file
#7
Nelly-Barret
closed
2 weeks ago
3
Set up a CI/CD
#6
Nelly-Barret
closed
1 month ago
2
Adding tests, at least to class methods, and possibly on ETL
#5
Nelly-Barret
opened
1 month ago
2
Specify an update policy
#4
Nelly-Barret
closed
3 weeks ago
2
What does make an instance unique?
#3
Nelly-Barret
closed
2 weeks ago
6
Few variables do not have an associated ontology code
#2
Nelly-Barret
opened
1 month ago
0
Automatically get the metadata file from the Google SpreadSheets
#1
Nelly-Barret
opened
1 month ago
4
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