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NeuroML
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pyNeuroML
A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Extend `pynml` to include a `-biosimulations` flag to submit simulations
#347
sanjayankur31
opened
2 months ago
0
feat(optional-deps): add warnings to inform users of optional packages
#346
sanjayankur31
closed
2 months ago
0
chore: move to ruff
#345
sanjayankur31
closed
2 months ago
0
creating and sending omex archives to biosimulations
#344
sanjayankur31
closed
2 months ago
1
Minor fixes and tests for XPP export; to v1.2.10
#343
pgleeson
closed
2 months ago
0
Feat/recv2- Recording functionality
#342
AdityaBITMESRA
opened
2 months ago
1
Draft - Added cell realignment with pca
#341
lej0hn
closed
1 month ago
0
Feat/rec- I have added the code to include video recording functionality
#340
AdityaBITMESRA
closed
2 months ago
0
feat(annotations): add wrapper to write annotations
#339
sanjayankur31
closed
2 months ago
0
Initial version of pynml-xpp, for parsing XPP files and converting to LEMS
#338
pgleeson
closed
2 months ago
0
Implement functions to send generated OMEX file to Biomodels using API
#337
sanjayankur31
opened
2 months ago
0
Implement metadata generation for OMEX file generation
#336
sanjayankur31
opened
2 months ago
0
pynml-archive: add `-sedml`
#335
sanjayankur31
closed
2 months ago
5
Issue/318- Adding Video recording functionality to vispy viewer
#334
AdityaBITMESRA
closed
2 months ago
1
Feat/issue #318- Video recording functionality
#333
AdityaBITMESRA
closed
2 months ago
0
feat(LEMSSimulation): allow using float/str for duration/dt
#332
sanjayankur31
closed
2 months ago
1
docs: add YBCS as a contributor for code
#331
allcontributors[bot]
closed
2 months ago
0
[Bug] ExportSWC: exceptions are wrong
#330
sanjayankur31
opened
2 months ago
2
Add option to generate SEDML file from LEMS and use this as master in exported OMEX archive
#329
pgleeson
opened
2 months ago
0
Add utility function to create SpikeArray from file
#328
sanjayankur31
opened
2 months ago
0
figures generated by `pynml-modchananalysis` are saved by default
#327
YBCS
closed
2 months ago
6
add -swc in pynml
#326
YBCS
closed
2 months ago
8
Feat/issue 321: add a parallel runner
#325
sanjayankur31
closed
2 months ago
0
docs: add AdityaBITMESRA as a contributor for bug, and ideas
#324
allcontributors[bot]
closed
3 months ago
0
docs: add Dhruvanshu-Joshi as a contributor for bug, and ideas
#323
allcontributors[bot]
closed
3 months ago
0
docs: add lej0hn as a contributor for bug, and ideas
#322
allcontributors[bot]
closed
3 months ago
0
[simulation] Add method to run multiple sims in parallel using pp
#321
sanjayankur31
opened
3 months ago
0
Added warning for missing included files
#320
lej0hn
closed
1 month ago
4
[cell analysis] Implement morphological statistics for NeuroML cell models
#319
sanjayankur31
opened
3 months ago
0
[vispy viewer] investigate if we can record a video of the rotating image
#318
sanjayankur31
opened
3 months ago
2
[vispy viewer] align cells along its first principal component
#317
sanjayankur31
opened
3 months ago
3
<feat> : Added feature to save vispy obj and gz files
#316
Dhruvanshu-Joshi
opened
3 months ago
13
Add warnings about missing files of model during visualisation
#315
lej0hn
opened
3 months ago
1
feat: split vispy into qt5 and qt6 deps
#314
sanjayankur31
closed
3 months ago
0
Feat/issue 303: de-duplicate plot spikes code
#313
AdityaBITMESRA
closed
1 month ago
67
To v1.2.7 and some updates to -run-tellurium
#312
pgleeson
closed
3 months ago
0
plot-timeseries: expose option in cli to allow saving plot to a file
#311
sanjayankur31
closed
3 months ago
0
To v1.2.4; include pyneuroml.utils.misc in pynml imports
#310
pgleeson
closed
3 months ago
0
Refactored the PlotSpikes.py file
#309
AdityaBITMESRA
closed
3 months ago
3
Ascertain and set `NEURON_HOME` if the environment variable is not set
#308
sanjayankur31
opened
4 months ago
5
Feat: Add method and cli to plot time series
#307
sanjayankur31
closed
4 months ago
1
Document sbml
#306
sanjayankur31
closed
4 months ago
1
Feat/ run tellurium
#305
pgleeson
closed
4 months ago
0
Feat/ run tellurium
#304
robertvi
closed
4 months ago
1
Refactor: de-duplicate PlotSpikes code
#303
sanjayankur31
opened
4 months ago
2
Updated jnml jar with SED-ML file writing
#302
pgleeson
closed
4 months ago
0
Improve default positioning of legend on plots
#301
pgleeson
closed
4 months ago
0
Feat/ run tellurium
#300
robertvi
closed
4 months ago
2
Chore: run `no_implicit_optional` on code base
#299
sanjayankur31
opened
4 months ago
0
Adds util method to generate simulation scripts in a different, clean directory
#298
sanjayankur31
closed
4 months ago
3
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