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NeuroML
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pyNeuroML
A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Updated jnml jar with SED-ML file writing
#302
pgleeson
closed
4 months ago
0
Improve default positioning of legend on plots
#301
pgleeson
closed
4 months ago
0
Feat/ run tellurium
#300
robertvi
closed
4 months ago
2
Chore: run `no_implicit_optional` on code base
#299
sanjayankur31
opened
4 months ago
0
Adds util method to generate simulation scripts in a different, clean directory
#298
sanjayankur31
closed
4 months ago
3
WIP: module to enable conversion of sim data to nwb
#297
sanjayankur31
opened
5 months ago
0
feat(pynml): respect `JNML_MAX_MEMORY_LOCAL` env variable
#296
sanjayankur31
closed
5 months ago
0
added -sbml-sedml option passing through to jnml
#295
robertvi
closed
4 months ago
3
feat: morphology plotting: allow marking/highlighting individual segments
#294
sanjayankur31
closed
5 months ago
1
Issue compiling .mod files on Apple Silicon [Bug]
#293
olitr20
closed
5 months ago
5
fix(vispy): use proximal and distal radii for mesh
#292
sanjayankur31
closed
6 months ago
0
To v1.1.10 & black formatting
#291
pgleeson
closed
6 months ago
0
Tested sedml validate changes
#290
pgleeson
closed
6 months ago
0
added -validate-sedml option
#289
robertvi
closed
6 months ago
1
added SEDML validate option (rebased)
#288
robertvi
closed
7 months ago
0
added SEDML validate option
#287
robertvi
closed
7 months ago
5
feat(archive): also handle h5 files
#286
sanjayankur31
opened
7 months ago
0
archiving/nsg: include HDF5 exports
#285
sanjayankur31
opened
7 months ago
2
feat(py312): mark 3.12 as supported
#284
sanjayankur31
closed
4 months ago
2
Drop explicit inspyred installation in CI
#283
sanjayankur31
closed
7 months ago
0
feat!: drop Py3.7 support
#282
sanjayankur31
closed
7 months ago
1
Master changes -> dev
#281
pgleeson
closed
7 months ago
0
fix(nsgr-netpyne): include model files in NSG zip also
#280
sanjayankur31
closed
7 months ago
0
Include generation of animated matplotlib plots
#279
sanjayankur31
closed
1 day ago
13
Add option to save vispy generated meshdata
#278
sanjayankur31
opened
7 months ago
5
Add option to validate SED-ML files
#277
pgleeson
closed
2 months ago
2
docs: add robertvi as a contributor for code, and test
#276
allcontributors[bot]
closed
7 months ago
0
Tweaks to sbml; fix generate_plot() in pynml; to v1.1.7
#275
pgleeson
closed
7 months ago
0
Test sbml
#274
pgleeson
closed
7 months ago
0
wip(vispy): add lighting
#273
sanjayankur31
opened
8 months ago
0
Chord diagram and other connectivity plot related refactoring
#272
sanjayankur31
opened
8 months ago
0
feat(plotter): use matplotlib rcparams defaults for missing options
#271
sanjayankur31
closed
8 months ago
0
feat(graph-generator): allow passing kwargs to GraphVizHandler
#270
sanjayankur31
closed
8 months ago
0
feat(pynml): do not import plotters if mpl is not already imported
#269
sanjayankur31
closed
8 months ago
0
Add tests running simple neuron + netpyne sims on nsg
#268
sanjayankur31
opened
8 months ago
1
Testing sbml
#267
pgleeson
closed
8 months ago
0
added -validate-sbml option
#266
robertvi
closed
7 months ago
5
Development
#265
robertvi
closed
8 months ago
0
Close cylindrical meshes for vispy viewer
#264
sanjayankur31
closed
8 months ago
2
For 1.1.3 release
#263
sanjayankur31
closed
8 months ago
0
Expose `meta` in LEMSSimulation
#262
sanjayankur31
closed
7 months ago
0
chore(deps): remove unused pandas
#261
sanjayankur31
closed
9 months ago
0
Improve performance of vispy plotter using meshes and their instances
#260
sanjayankur31
closed
8 months ago
5
To 1.1.2
#259
sanjayankur31
closed
9 months ago
0
Reduce memory usage when generating morph plots and a few minor fixes
#258
sanjayankur31
closed
9 months ago
0
Changes for NML v2.3 release
#257
pgleeson
closed
9 months ago
0
To v1.1.0; uses jnml jar 0.12.4
#256
pgleeson
closed
9 months ago
0
feat(write): include HDF5 writing
#255
sanjayankur31
closed
9 months ago
0
To v1.1.0; Update to jnml v0.12.3 jar
#254
pgleeson
closed
9 months ago
0
Feat/hybrid plots: allow users to specify how they want various cells in networks to be plotted
#253
sanjayankur31
closed
9 months ago
0
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