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NeuroML
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pyNeuroML
A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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fix(plots): provide axis for colorbar
#252
sanjayankur31
closed
9 months ago
0
fix(vispy-morph): get title from cell object if no network is found
#251
sanjayankur31
closed
9 months ago
0
Add option to validate SBML
#250
pgleeson
closed
7 months ago
3
feat(pynml): include more info in version
#249
sanjayankur31
closed
9 months ago
0
feat(morph-plots): improve colouring of cells/groups in schematic plot
#248
sanjayankur31
closed
9 months ago
0
To v1.0.10; removed 'experimental' build config, uses 'dev' as development env/dependencies
#247
pgleeson
closed
11 months ago
0
allow netpyne runner to also return command output
#246
pgleeson
closed
11 months ago
0
To v1.0.9
#245
pgleeson
closed
11 months ago
0
Remove argparse dependency
#244
pgleeson
closed
11 months ago
0
Feat/nsgr integration
#243
sanjayankur31
closed
9 months ago
4
Feat/chan den analysis
#242
sanjayankur31
closed
9 months ago
1
Add function to generate LFP plots
#241
sanjayankur31
opened
11 months ago
2
Feat/add all contributors
#240
sanjayankur31
closed
11 months ago
0
feat(pynml-netpyne): allow netpyne runner to also return command output
#239
sanjayankur31
closed
11 months ago
0
Feat: extend morphology plotting methods to accept a file path and objects; move vispy bits to separate module to reduce import errors (breaking)
#238
sanjayankur31
closed
11 months ago
1
feat(if-curve): save spike threshold current value also
#237
sanjayankur31
closed
11 months ago
0
Add functionality to generate ion channel distribution metrics in models
#236
sanjayankur31
closed
9 months ago
0
feat(generate-if-curve): allow specifying segment and fraction along
#235
sanjayankur31
closed
1 year ago
2
Chore/remove deprecated setup.py
#234
pgleeson
closed
11 months ago
0
chore: remove deprecated setup.py
#233
sanjayankur31
closed
11 months ago
0
To v1.0.8; Catches import of vispy so won't fail if not installed.
#232
pgleeson
closed
1 year ago
0
To v1.0.7; remove inspyred from setup.py all reqs
#231
pgleeson
closed
1 year ago
0
To v1.0.6 & remove inspyred req
#230
pgleeson
closed
1 year ago
0
Install pyelectro & neurotune from pypi
#229
pgleeson
closed
1 year ago
0
To v1.0.2 & fix for pypi
#228
pgleeson
closed
1 year ago
0
Update to v1.0.1 with jnml jar v0.12.2
#227
pgleeson
closed
1 year ago
0
chore: regenerate man pages
#226
sanjayankur31
closed
1 year ago
0
reloading data uses quantity path string instead of column id
#225
sanjayankur31
closed
5 months ago
0
Print `python -version`, neuron path etc. info in `pyneuroml -version`
#224
sanjayankur31
closed
9 months ago
0
Fix for reloading saved spike data
#223
pgleeson
closed
1 year ago
0
Plotting fixes related to #220, and regenerates man pages
#222
sanjayankur31
closed
1 year ago
0
A few minor changes and bugfix for 2d plotting
#221
pgleeson
closed
1 year ago
0
Suggested updates to 2D plots etc
#220
pgleeson
closed
9 months ago
1
Feat/more morphplots -> exp
#219
pgleeson
closed
1 year ago
0
feat: add method to rotate cell
#218
sanjayankur31
closed
11 months ago
1
test(modchananalysis): test to check that nrnivmodl is run when required
#217
sanjayankur31
closed
1 year ago
3
pynml-modchananalysis excepting on division by zero
#216
borismarin
closed
1 year ago
3
Adding logic for one-shot validation of multiple input files
#215
borismarin
closed
1 year ago
0
As a user, I would like to add headers to the output files I generate so I can easily see what was recorded in each item at a later date
#214
sanjayankur31
closed
8 months ago
3
Feat/more morphplots
#213
sanjayankur31
closed
1 year ago
1
feat: improve installation of extra deps
#212
sanjayankur31
closed
1 year ago
0
ci(py311): add py311 to ci and setup.py
#211
sanjayankur31
closed
1 year ago
0
As a user, I want to be able to run my simulations using different backends without modifying my Python NeuroML simulation code
#210
sanjayankur31
opened
1 year ago
0
To v0.7.5 and jnml 0.12.1
#209
pgleeson
closed
1 year ago
0
Feature: add functions to create a combine archive from a provided "root" file
#208
sanjayankur31
closed
1 year ago
1
Implement archiving to combine archive format
#207
sanjayankur31
closed
9 months ago
2
Feat/document channelanalysis
#206
sanjayankur31
closed
1 year ago
0
Adding latest jnml jar
#205
pgleeson
closed
1 year ago
0
mview_neuroml2.hoc docs not create default soma, dendrite, axonal groups
#204
sanjayankur31
closed
1 year ago
2
Improved error code generation; To v0.7.3
#203
pgleeson
closed
1 year ago
0
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