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NeuroML
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pyNeuroML
A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Fixes display of realtime output
#171
pgleeson
closed
2 years ago
0
Add CellBuilder.py to pyNeuroML
#170
pgleeson
closed
2 years ago
1
More EDEN functions
#169
pgleeson
closed
2 years ago
0
To v0.7.0 using jnml jar v0.12.0 & initial EDEN support
#168
pgleeson
closed
2 years ago
0
Add Eden support
#167
sanjayankur31
closed
2 years ago
0
pynml -validate *nml doesn't validate all *nml files at once
#166
pgleeson
closed
1 year ago
2
Add a check in pynml-modchananalysis to see whether mod files are compiled yet
#165
pgleeson
closed
11 months ago
0
Document neuron export functions
#164
sanjayankur31
closed
2 years ago
3
[Bug] NetPyNe 1.0.1 doesn't work with pyNeuroML
#163
jonrkarr
closed
1 year ago
2
BREAKING CHANGE: drop py2 support
#162
sanjayankur31
closed
2 years ago
0
pyNeuroML 0.5.19 breaks simulation with Brian2
#161
jonrkarr
closed
2 years ago
2
Add swc export to pynml
#160
sanjayankur31
closed
2 years ago
1
Feat/document 2stage opt
#159
sanjayankur31
closed
2 years ago
0
Specifying universal_newlines so "realtime output" works correctly
#158
mwatts15
closed
2 years ago
1
Tweaks to tuner code
#157
sanjayankur31
closed
2 years ago
0
pip install modelspec version for dev
#156
pgleeson
closed
2 years ago
3
Feat/increase tuning verbosity
#155
sanjayankur31
closed
2 years ago
1
NeuroMLTuner: return fitted values as strings with units for easy consumption?
#154
sanjayankur31
closed
1 year ago
1
Experimental
#153
pgleeson
closed
2 years ago
0
NeuroML 2.2 release
#152
pgleeson
closed
2 years ago
2
docs: reorder sections to improve readability
#151
sanjayankur31
closed
2 years ago
0
Generalise modification of parameters in NeuroMLController
#150
sanjayankur31
opened
2 years ago
2
chore: minor matplotlib deprecation related updates
#149
sanjayankur31
closed
2 years ago
0
Check status of pp module and drop it if it is unmaintained
#148
sanjayankur31
closed
2 years ago
3
Documents the tuning related classes
#147
sanjayankur31
closed
2 years ago
1
Add man pages for all CLI tools
#146
sanjayankur31
closed
2 years ago
0
Add tuning example to CI
#145
sanjayankur31
closed
2 years ago
0
Fix/tune dict keys copy
#144
sanjayankur31
closed
2 years ago
0
Feat/extra requires
#143
sanjayankur31
closed
2 years ago
2
Add `exit_on_fail` and `return_string` options to `validate_neuroml2_lems_file` to enable errors in LEMS files to be retrieved programmatically
#142
jonrkarr
opened
2 years ago
0
Manage or document additional requirements for other simulation tools
#141
jonrkarr
closed
2 years ago
4
[Bug] jNeuroML ignores errors with NetPyNe
#139
jonrkarr
closed
1 year ago
1
[Bug] Brian2 simulation function produces space-separated results rather than tab-separated results
#138
jonrkarr
closed
2 years ago
1
[Bug] Brian2, NetPyNe simulation methods appear to be fragile to the number of steps
#137
jonrkarr
closed
2 years ago
1
[Bug] Length of time courses is not configured consistently with Brian2 and NetPyNe
#136
jonrkarr
closed
2 years ago
1
`run_lems_with_jneuroml_brian2` surprisingly requires the path to the LEMS file to be in the current directory
#135
jonrkarr
opened
2 years ago
1
feat(pynml): add `-moose` option
#134
sanjayankur31
closed
2 years ago
0
Add `-swc` option to export NeuroML cell files to SWC format
#133
sanjayankur31
closed
2 months ago
7
Provide `export_to_<sim>` methods?
#132
sanjayankur31
opened
2 years ago
0
Provide shorter aliases to `run...` methods?
#131
sanjayankur31
closed
2 years ago
0
Allow generation of connectivity matrics using the API
#130
sanjayankur31
opened
2 years ago
0
Would it be useful to add functionality to search neuromldb in `pynml`?
#129
sanjayankur31
closed
2 years ago
0
To v0.5.18
#128
pgleeson
closed
2 years ago
0
Feat/issue 126: allow programmatic access to output of jnml from validation
#127
sanjayankur31
closed
2 years ago
5
Expose programmatic access to error messages
#126
jonrkarr
closed
2 years ago
8
Provide cleaner error messages
#125
jonrkarr
closed
4 months ago
1
feat: format with black
#124
sanjayankur31
closed
2 years ago
1
improvement: add typing as requirements for py<3.5
#123
sanjayankur31
closed
2 years ago
0
Upgrading jneuroml JAR and addressing some warnings
#122
mwatts15
closed
2 years ago
0
PR: list recordables
#121
sanjayankur31
closed
3 years ago
3
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