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phylogatr-web
The web app for the Phylogatr Project - https://phylogatr.org/
https://phylogatr.org/
MIT License
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enable DOI citation of specific GBIF data
#82
dnoesgaard
opened
11 months ago
1
add initer to log slurm commands
#81
johrstrom
closed
1 year ago
0
-D option needs to be a string
#80
johrstrom
closed
1 year ago
0
change directory to a real working directory
#79
johrstrom
closed
1 year ago
0
number of sequences does not match the number of individuals in the occurrence file
#78
johrstrom
opened
2 years ago
0
user flags
#77
shastara
opened
2 years ago
0
update GBIF and rerun with new accessions
#76
shastara
opened
2 years ago
0
sequence ID that doesn't follow system
#75
shastara
opened
2 years ago
0
copying duplicates in final alignment
#74
shastara
opened
2 years ago
0
full download error
#73
shastara
opened
2 years ago
2
Fix latlon
#72
johrstrom
opened
2 years ago
0
parallelize link_gbif_with_genbank
#71
johrstrom
opened
2 years ago
0
add figures for pipeline documentation
#70
johrstrom
closed
2 years ago
0
GenBank and GBIF mismatch
#69
johrstrom
opened
2 years ago
1
configure lograge to ignore ping
#68
johrstrom
closed
2 years ago
1
UI updates
#67
johrstrom
closed
2 years ago
0
/ping controller still logs
#66
treydock
closed
2 years ago
0
Fix filtering gbif data among other updates
#65
johrstrom
closed
2 years ago
0
add a ping controller
#64
johrstrom
closed
2 years ago
0
Poor quality sequences not dropped
#63
skdecker
opened
2 years ago
1
fix zenodo release
#62
johrstrom
closed
2 years ago
0
job to use real db url
#61
johrstrom
closed
2 years ago
0
add a zenodo release action
#60
johrstrom
closed
2 years ago
0
dont mkdir and fix gems for latest version
#59
johrstrom
closed
2 years ago
0
missing shrew data
#58
johrstrom
closed
2 years ago
10
Changes to support K8 DB
#57
treydock
closed
2 years ago
0
Add mariadb client package
#56
treydock
closed
2 years ago
0
rework alignments
#55
johrstrom
closed
2 years ago
0
add ps to dockerfile
#54
johrstrom
closed
2 years ago
0
majority of bold records are being filtered
#53
johrstrom
opened
2 years ago
0
adding bold records records metrics
#52
johrstrom
closed
2 years ago
0
update image
#51
johrstrom
closed
2 years ago
0
new flag for manually updated records
#50
johrstrom
opened
2 years ago
0
upgrade to ruby 2.7 and bundler 2
#49
johrstrom
closed
2 years ago
0
add bold records and commits the metrics:save_record task
#48
johrstrom
closed
2 years ago
0
metric data for filtering bold data
#47
johrstrom
closed
2 years ago
0
metrics for populate database
#46
johrstrom
closed
2 years ago
0
save metrics for link_gbif_with_genbank
#45
johrstrom
closed
2 years ago
0
start metric collection
#44
johrstrom
closed
2 years ago
0
store gbif_filter_occurrences metrics
#43
johrstrom
closed
2 years ago
0
some alignment updates
#42
johrstrom
closed
2 years ago
0
Update pipeline
#41
johrstrom
closed
2 years ago
0
store metric data
#40
johrstrom
closed
2 years ago
1
rm rspec bits from rubocop
#39
johrstrom
closed
2 years ago
0
updates for alignment and metric collection
#38
johrstrom
closed
2 years ago
0
need gdbm gem and quotes on db strings
#37
johrstrom
closed
2 years ago
0
Update pipeline
#36
johrstrom
closed
2 years ago
0
use sbatch files in submit script
#35
johrstrom
closed
2 years ago
0
Update pipeline
#34
johrstrom
closed
2 years ago
0
ensure relative file paths
#33
johrstrom
closed
2 years ago
0
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