OmicsML dance issues - Githubissues

OmicsML / dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

https://pydance.readthedocs.io

BSD 2-Clause "Simplified" License

351 stars 36 forks source link

issues

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build(deps): bump tifffile from 2024.2.12 to 2024.8.30

#464 dependabot[bot] opened 3 months ago
0
build(deps): bump tifffile from 2024.2.12 to 2024.8.10

#463 dependabot[bot] closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#462 pre-commit-ci[bot] opened 4 months ago
0
build(deps): bump tifffile from 2024.2.12 to 2024.7.24

#461 dependabot[bot] closed 3 months ago
1
build(deps-dev): bump pytest from 8.2.0 to 8.3.2

#460 dependabot[bot] opened 4 months ago
0
real_multi_modality

#459 xingzhongyu opened 4 months ago
0
build(deps-dev): bump pytest from 8.2.0 to 8.3.1

#458 dependabot[bot] closed 4 months ago
1
Update README.md

#457 JiayuanDing100 closed 4 months ago
0
build(deps): bump tifffile from 2024.2.12 to 2024.7.2

#456 dependabot[bot] closed 4 months ago
1
Human PDAC (ST) for Spot Deconvolution is missing true_p.csv

#455 alyosama opened 5 months ago
0
build(deps): bump opencv-python from 4.9.0.80 to 4.10.0.84

#454 dependabot[bot] opened 5 months ago
0
build(deps): bump tifffile from 2024.2.12 to 2024.6.18

#453 dependabot[bot] closed 4 months ago
1
build(deps-dev): bump pytest from 8.2.0 to 8.2.2

#452 dependabot[bot] closed 4 months ago
1
build(deps): bump opencv-python from 4.9.0.80 to 4.10.0.82

#451 dependabot[bot] closed 5 months ago
1
build(deps): bump leidenalg from 0.10.1 to 0.10.2

#450 dependabot[bot] opened 5 months ago
0
build(deps): bump tifffile from 2024.2.12 to 2024.5.22

#449 dependabot[bot] closed 5 months ago
1
[pre-commit.ci] pre-commit autoupdate

#448 pre-commit-ci[bot] closed 5 months ago
0
build(deps): bump networkx from 3.2.1 to 3.3

#447 dependabot[bot] closed 5 months ago
1
build(deps): bump kdepy from 1.1.8 to 1.1.9

#446 dependabot[bot] closed 5 months ago
1
build(deps-dev): bump pytest-xdist from 3.5.0 to 3.6.1

#445 dependabot[bot] closed 5 months ago
1
build(deps): bump h5py from 3.10.0 to 3.11.0

#444 dependabot[bot] closed 5 months ago
1
build(deps): bump scanpy from 1.9.8 to 1.10.1

#443 dependabot[bot] closed 6 months ago
1
build(deps): bump pyro-ppl from 1.8.6 to 1.9.0

#442 dependabot[bot] closed 6 months ago
1
build(deps): bump statsmodels from 0.14.0 to 0.14.2

#441 dependabot[bot] closed 6 months ago
1
build(deps): bump scipy from 1.11.4 to 1.13.0

#440 dependabot[bot] closed 6 months ago
1
build(deps): bump threadpoolctl from 3.2.0 to 3.5.0

#439 dependabot[bot] closed 6 months ago
1
build(deps-dev): bump pytest from 7.4.3 to 8.2.0

#438 dependabot[bot] closed 6 months ago
1
build(deps): bump pandas from 1.5.3 to 2.2.2

#437 dependabot[bot] closed 6 months ago
1
libcusparse.so.11

#436 arashyunesi closed 7 months ago
2
ImportError when directly running the code in the terminal

#435 pujing0215 closed 7 months ago
1
update reference of dance paper and survey paper

#434 JiayuanDing100 closed 8 months ago
0
Fix a bug in install.sh

#433 HelloWorldLTY closed 8 months ago
2
Tutorial notebook is outdated

#432 wehos opened 8 months ago
1
Errors with Installation

#431 wehos opened 8 months ago
2
[pre-commit.ci] pre-commit autoupdate

#430 pre-commit-ci[bot] closed 6 months ago
0
build(deps): bump threadpoolctl from 3.2.0 to 3.4.0

#429 dependabot[bot] closed 7 months ago
1
build(deps-dev): bump pytest from 7.4.3 to 8.1.1

#428 dependabot[bot] closed 7 months ago
1
build(deps): bump pandas from 1.5.3 to 2.2.1

#427 dependabot[bot] closed 7 months ago
1
build(deps): bump threadpoolctl from 3.2.0 to 3.3.0

#426 dependabot[bot] closed 8 months ago
1
build(deps-dev): bump pytest from 7.4.3 to 8.0.2

#425 dependabot[bot] closed 8 months ago
1
build(deps): bump numpy from 1.26.3 to 1.26.4

#424 dependabot[bot] closed 6 months ago
1
Celltype annotation automl

#423 xingzhongyu closed 5 months ago
0
[pre-commit.ci] pre-commit autoupdate

#422 pre-commit-ci[bot] closed 9 months ago
0
Pipeline bypass mechanism to replace `*PlaceHolder` transforms

#421 RemyLau opened 9 months ago
0
Improve train/val/test data retrieval mech (instead of getting them individually?)

#420 RemyLau opened 9 months ago
0
build(deps-dev): bump pre-commit from 3.6.0 to 3.6.1

#419 dependabot[bot] closed 9 months ago
1
build(deps): bump tifffile from 2023.7.10 to 2024.2.12

#418 dependabot[bot] closed 9 months ago
1
build(deps): bump tqdm from 4.66.1 to 4.66.2

#417 dependabot[bot] closed 9 months ago
1
[pre-commit.ci] pre-commit autoupdate

#416 pre-commit-ci[bot] closed 9 months ago
0
build(deps): bump sphinx-rtd-theme from 1.3.0 to 2.0.0

#415 dependabot[bot] closed 9 months ago
1