OpenGene GeneFuse issues

OpenGene / GeneFuse

Gene fusion detection and visualization

MIT License

114 stars 62 forks source link

issues

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Multiple runs show different results.

#44 Crispy13 opened 5 months ago
0
Maybe a typo in the source code, `abs(left.startGP.position) < abs(left.startGP.position)`?

#43 Crispy13 opened 5 months ago
0
IGH-BCL2 is not detected but bam is supported

#42 swxzh621 opened 1 year ago
1
different gene set gives different results for same fusion

#41 mhanbioinfo opened 1 year ago
0
the data size of raw data effected fusion result

#40 Tina610 opened 1 year ago
0
JSON output corrupted due to a not escaped double-quotes character

#39 FrancescaMiccolis opened 1 year ago
1
how to filter fusion result

#38 summerghw opened 2 years ago
0
GOPC_ENST00000052569.6 location

#37 iamwjy1 opened 2 years ago
0
tmprss-erg

#36 IlyIla opened 2 years ago
0
calculate genefuse fusion freq

#35 asmlgkj closed 2 years ago
0
GeneFuse on RNA-seq

#34 deb0612 opened 3 years ago
0
How to get VAF info from genefuse results?

#33 ZehangJiang opened 3 years ago
0
std::bad_alloc

#32 Xiaohuaniu0032 opened 3 years ago
0
Can not get the fusions with the testdata

#31 kingyang728 opened 3 years ago
1
while running Stuck

#30 hulai-hulai opened 3 years ago
10
fix strand oritentation bugs & add error msgs

#29 ZKai0801 closed 4 years ago
0
fix bugs mentioned in #26

#28 ZKai0801 closed 4 years ago
0
GeneFuse ignores fusions in TCF3

#27 nvolkovaGEL opened 4 years ago
3
Fusion-making .py script does not take into account gene orientation

#26 nvolkovaGEL opened 4 years ago
8
Update README.md

#25 ZKai0801 closed 4 years ago
0
Update README.md

#24 ZKai0801 closed 4 years ago
2
update for gen_fusion_file

#23 ZKai0801 closed 4 years ago
3
gen_fusion_file.jl is out of date

#22 ZKai0801 closed 4 years ago
2
Looking for "Encompassing Reads" in the output.

#21 chatchawit closed 3 years ago
0
make: *** No rule to make target 'install'. Stop.

#20 jrhaulung opened 4 years ago
2
primary transcripts used in fusion.csv

#19 zhengxinchang opened 4 years ago
1
How to use GeneFuse to detect fusion for nanopore sequencing fastq?

#18 pepenglp opened 4 years ago
1
gen_fusion_file.jl

#17 gerbarinov opened 5 years ago
2
No fusion found using tests data

#16 chizhenfen opened 5 years ago
20
the gen_fusion_file.jl script does not work because OpenGene can not be installed

#15 yahiaBioinfo opened 5 years ago
4
error when creating fusion.csv file

#14 ericavalentini opened 5 years ago
3
可否用gtf文件产生融合基因列表的csv文件？

#13 wangshun1121 opened 5 years ago
0
fusion only option

#12 foxchase closed 2 years ago
1
how to see the version of genefuse?

#11 ShannonDaddy opened 6 years ago
1
What is the minimum required read length?

#10 billzt opened 6 years ago
2
No fusion generated using demo fastq files

#9 foxchase opened 6 years ago
4
No fusion found in tests data

#8 shikharoy123 opened 6 years ago
1
Sort the reported fusions by importance

#7 sfchen opened 6 years ago
0
Support cross pair

#6 sfchen opened 6 years ago
0
Whether the software supports fastq data from both DNAseq and RNAseq or not?

#5 xiezhan opened 6 years ago
1
Support BAM input

#4 sfchen opened 6 years ago
0
get stuck if no read is presented in the fastq file

#3 sfchen closed 6 years ago
1
k-mer hit will miss when the fusion mates are in different strands

#2 sfchen closed 6 years ago
1
gz is not yet supported for reference file <-r>

#1 sfchen opened 7 years ago
0