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OpenTreeOfLife
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peyotl
python library for interacting with Open Tree of Life resources
BSD 2-Clause "Simplified" License
11
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7
forks
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Import nexml fails
#183
snacktavish
opened
9 months ago
2
Synth on demand in master
#182
mtholder
closed
1 year ago
0
handle list, tuple < comparison
#181
mtholder
closed
1 year ago
0
Pyramid adjacent changes
#180
jimallman
closed
1 year ago
0
Pyramid adjacent changes
#179
jimallman
closed
2 years ago
0
pin setuptools to fix use_2to3
#178
snacktavish
closed
2 years ago
1
Move GitHub API access tokens to a header?
#177
jimallman
opened
4 years ago
1
Export preorder
#176
bredelings
closed
5 years ago
0
ws-tests failing for phylesystem-api / peyotl
#175
jar398
closed
6 years ago
4
Coerce TreeBASE DOIs to URLs
#174
jimallman
closed
7 years ago
1
Replace escaped Unicode chars (`\u20ac`) in stored JSON?
#173
jimallman
opened
7 years ago
2
Pickle ott ranks
#172
kcranston
closed
7 years ago
1
Include exclude trees in synth
#171
jimallman
closed
7 years ago
0
fix of var name
#170
mtholder
closed
7 years ago
1
Physcraper
#169
snacktavish
closed
7 years ago
0
TypeAwareDocStore.__init__ should not clone mirrors
#168
mtholder
opened
7 years ago
0
Remove doi coercion
#167
jimallman
closed
7 years ago
1
peyotl changes to prune additional tips from synth inputs
#166
mtholder
closed
7 years ago
0
Validation for URL fields...
#165
jar398
opened
7 years ago
0
Reformat for pep 8
#164
mtholder
closed
7 years ago
0
Seperation of api tests from one file to: local vs ws/read_only and ws/write_test
#163
mtholder
closed
7 years ago
0
Collections store
#162
mtholder
closed
7 years ago
0
Otgmaster
#161
mtholder
closed
7 years ago
2
Coerce amendment DOIs to URLs
#160
jimallman
closed
7 years ago
0
Use `min`, not `max`! Fixes #158.
#159
jimallman
closed
7 years ago
0
Error when adding multiple new taxa in a single amendment
#158
jimallman
closed
7 years ago
0
Refactor to define document types via configuration?
#157
jimallman
opened
7 years ago
0
devapi -> api in default.conf
#156
josephwb
closed
7 years ago
0
Coerce DOI to URL in amendment file
#155
jar398
opened
8 years ago
1
dealing with False in boolean meta data
#154
mtholder
closed
8 years ago
0
Amendment test fixes
#153
jimallman
closed
8 years ago
14
Add support for amendments
#152
jimallman
closed
8 years ago
0
add flag to `scripts/ott/suppress_by_flag.py` to prune internal nodes that are converted to tips by other flag pruning
#151
mtholder
closed
8 years ago
2
Quieter verification that no update is needed
#150
jar398
closed
8 years ago
1
Provide both raw and view URLs for github studies / collections
#149
kcranston
opened
8 years ago
2
version # and a wrapper function for splitting study and tree ids based on @
#148
mtholder
closed
8 years ago
0
single values vs lists for same property
#147
kcranston
closed
8 years ago
3
Change studyid_treeid to studyid@treeid
#146
kcranston
closed
8 years ago
3
Check for lossless roundtrip nexson - export to NeXML - import NeXML - nexson
#145
jar398
opened
8 years ago
0
merging stuff from mtholder/peyotl
#144
kcranston
closed
8 years ago
0
Test treebase
#143
mtholder
closed
8 years ago
0
Error importing from TreeBASE
#142
kcranston
closed
8 years ago
1
Method to get name of taxon
#141
jar398
closed
8 years ago
1
Fix nexson doc url
#140
jar398
closed
8 years ago
0
Script to collect list of tree / study properties
#139
kcranston
closed
8 years ago
4
Normalize DOI reference when importing from treebase; clean up existing phylesystem.
#138
jimallman
closed
7 years ago
5
NexsonProxy provides no way to get study-level properties
#137
jar398
opened
8 years ago
4
testChangedStudies failing after collections changes
#136
kcranston
closed
8 years ago
3
Fixes for support scripts (#134)
#135
jimallman
closed
8 years ago
2
iterating over studies
#134
kcranston
closed
8 years ago
2
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