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Oshlack
/
necklace
Combine reference and assembled transcriptomes for RNA-Seq analysis
https://github.com/Oshlack/necklace/wiki
GNU General Public License v3.0
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updating the beads in Necklace
#19
MDSharma
opened
3 months ago
0
no decent genome annotation, how to run the software?
#18
joleneyue
opened
2 years ago
2
groovy file modification
#17
joleneyue
closed
2 years ago
2
conda related installation issue
#16
sid5427
closed
3 years ago
3
stuck at merge_genome_annotation step
#15
stephanyfoster
closed
3 years ago
8
test run hangs on bowtie2-align-s
#14
chelseaherdman
closed
4 years ago
9
de novo assembly fasta, reads_R2 error
#13
stephanyfoster
opened
4 years ago
20
errors during test dataset
#12
DomeJoyce
opened
4 years ago
5
Add support for single end reads
#11
nadiadavidson
closed
4 years ago
1
Add step to check that all files specified in config exist
#10
nadiadavidson
opened
4 years ago
0
Switch blat with gmap for threading
#9
nadiadavidson
opened
5 years ago
0
FAILED at the beginning of pipeline
#8
ghost
closed
3 years ago
1
blat fails due to empty fasta records
#7
ctSkennerton
closed
5 years ago
2
FAILED to construct
#6
MDSharma
closed
3 years ago
4
Installation-prob
#5
avrajit
closed
5 years ago
4
Use expected threads for mapping and counting
#4
acesnik
closed
5 years ago
0
CPU count not passed to HISAT2
#3
acesnik
closed
5 years ago
3
Passing a genome-guided Trinity assembly to necklace
#2
flopezo
closed
5 years ago
5
Full length Nanopore reads
#1
abayega
closed
6 years ago
1