PGScatalog pgscatalog_utils issues

PGScatalog / pgscatalog_utils

(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

Apache License 2.0

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issues

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Update README.md

#88 nebfield closed 3 weeks ago
0
Fix variance check for single-samples

#87 smlmbrt closed 2 months ago
1
PGS002807 contains variant beyond chromosome size

#86 mfasold opened 3 months ago
1
Cannot combine all scorefiles

#85 mfasold closed 3 months ago
12
v0.5.3

#84 nebfield closed 4 months ago
0
Explore parallelization of ancestry_analysis

#83 smlmbrt opened 4 months ago
1
Handling complex scoring files

#82 smlmbrt opened 4 months ago
0
v0.5.2

#81 nebfield closed 4 months ago
0
v0.5.1

#80 nebfield closed 4 months ago
0
Update aggregation to match ancestry output

#79 nebfield closed 4 months ago
0
v0.5.0

#78 nebfield closed 4 months ago
0
Drop samplesheet package and script

#77 nebfield closed 5 months ago
0
log fails to open on macOS

#76 nebfield opened 5 months ago
0
Continued fixes re: numeric IDs

#75 smlmbrt closed 7 months ago
0
Add more sources for the harmonized scoring file validator

#74 ens-lgil closed 4 months ago
1
Add custom exceptions

#73 nebfield closed 7 months ago
0
Make aggregated output consistent

#72 nebfield closed 4 months ago
2
Check valid matches in a consistent way

#71 nebfield closed 3 weeks ago
1
Check chr prefix in samplesheet

#70 nebfield closed 7 months ago
0
fix numeric IIDs

#69 nebfield closed 7 months ago
0
v0.4.3 release

#68 nebfield closed 7 months ago
0
remove assert in `match_combine`

#67 nebfield closed 7 months ago
0
handle HTTP connection exceptions

#66 nebfield closed 8 months ago
0
Read IIDs as text

#65 smlmbrt closed 4 months ago
4
Handle single samples in ancestry_analysis

#64 smlmbrt closed 7 months ago
1
Documentation

#63 smlmbrt closed 3 weeks ago
1
Refactor combine_scorefiles

#62 nebfield closed 7 months ago
1
combine scores in parallel

#61 nebfield closed 8 months ago
1
MATCH_COMBINE assertion error when match dataframe is empty

#60 nebfield closed 7 months ago
3
Check samplesheet for chr prefix

#59 nebfield closed 7 months ago
2
v0.4.2

#58 nebfield closed 9 months ago
0
Make sure ancestry_analysis works on single samples

#57 smlmbrt closed 7 months ago
6
Fix path resolution in `check_samplesheet`

#56 nebfield closed 10 months ago
1
v0.4.1 patch

#55 nebfield closed 10 months ago
0
fix setting user-agent when downloading

#54 nebfield closed 10 months ago
1
checksum computation path fix

#53 openpaul closed 10 months ago
2
combine_matches fails if no matches `matched` are found

#52 openpaul closed 7 months ago
3
Change relative path discovery behaviour

#51 nebfield closed 10 months ago
0
Explore improvements to adjustment methods

#50 smlmbrt opened 11 months ago
0
Refactor to a namespace package

#49 nebfield closed 3 weeks ago
2
Fix pc scaling

#48 smlmbrt closed 11 months ago
0
Rename package to remove underscore

#47 nebfield closed 3 weeks ago
2
PR for utils supporting pgsc_calc v2

#46 smlmbrt closed 11 months ago
0
Edits to ancestry_analysis

#45 smlmbrt closed 11 months ago
0
Refactor downloads to be more robust

#44 nebfield closed 1 year ago
2
Ancestry Script

#43 smlmbrt closed 1 year ago
0
Make the '.' variant valid

#42 ens-lgil closed 1 year ago
0
Make the '.' variant valid

#41 ens-lgil closed 1 year ago
3
Fix assertion errors

#40 smlmbrt closed 1 year ago
0
effect_weight column changes format

#39 smlmbrt closed 1 year ago
0