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PGScatalog
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pgscatalog_utils
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
Apache License 2.0
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ToDo: archive this repository
#89
smlmbrt
opened
1 week ago
0
Update README.md
#88
nebfield
closed
2 months ago
0
Fix variance check for single-samples
#87
smlmbrt
closed
4 months ago
1
PGS002807 contains variant beyond chromosome size
#86
mfasold
opened
5 months ago
1
Cannot combine all scorefiles
#85
mfasold
closed
5 months ago
12
v0.5.3
#84
nebfield
closed
6 months ago
0
Explore parallelization of ancestry_analysis
#83
smlmbrt
opened
6 months ago
1
Handling complex scoring files
#82
smlmbrt
opened
6 months ago
0
v0.5.2
#81
nebfield
closed
6 months ago
0
v0.5.1
#80
nebfield
closed
6 months ago
0
Update aggregation to match ancestry output
#79
nebfield
closed
6 months ago
0
v0.5.0
#78
nebfield
closed
6 months ago
0
Drop samplesheet package and script
#77
nebfield
closed
7 months ago
0
log fails to open on macOS
#76
nebfield
opened
7 months ago
0
Continued fixes re: numeric IDs
#75
smlmbrt
closed
9 months ago
0
Add more sources for the harmonized scoring file validator
#74
ens-lgil
closed
6 months ago
1
Add custom exceptions
#73
nebfield
closed
9 months ago
0
Make aggregated output consistent
#72
nebfield
closed
6 months ago
2
Check valid matches in a consistent way
#71
nebfield
closed
2 months ago
1
Check chr prefix in samplesheet
#70
nebfield
closed
9 months ago
0
fix numeric IIDs
#69
nebfield
closed
9 months ago
0
v0.4.3 release
#68
nebfield
closed
9 months ago
0
remove assert in `match_combine`
#67
nebfield
closed
9 months ago
0
handle HTTP connection exceptions
#66
nebfield
closed
10 months ago
0
Read IIDs as text
#65
smlmbrt
closed
6 months ago
4
Handle single samples in ancestry_analysis
#64
smlmbrt
closed
9 months ago
1
Documentation
#63
smlmbrt
closed
2 months ago
1
Refactor combine_scorefiles
#62
nebfield
closed
9 months ago
1
combine scores in parallel
#61
nebfield
closed
10 months ago
1
MATCH_COMBINE assertion error when match dataframe is empty
#60
nebfield
closed
9 months ago
3
Check samplesheet for chr prefix
#59
nebfield
closed
9 months ago
2
v0.4.2
#58
nebfield
closed
11 months ago
0
Make sure ancestry_analysis works on single samples
#57
smlmbrt
closed
9 months ago
6
Fix path resolution in `check_samplesheet`
#56
nebfield
closed
11 months ago
1
v0.4.1 patch
#55
nebfield
closed
1 year ago
0
fix setting user-agent when downloading
#54
nebfield
closed
1 year ago
1
checksum computation path fix
#53
openpaul
closed
1 year ago
2
combine_matches fails if no matches `matched` are found
#52
openpaul
closed
9 months ago
3
Change relative path discovery behaviour
#51
nebfield
closed
11 months ago
0
Explore improvements to adjustment methods
#50
smlmbrt
opened
1 year ago
0
Refactor to a namespace package
#49
nebfield
closed
2 months ago
2
Fix pc scaling
#48
smlmbrt
closed
1 year ago
0
Rename package to remove underscore
#47
nebfield
closed
2 months ago
2
PR for utils supporting pgsc_calc v2
#46
smlmbrt
closed
1 year ago
0
Edits to ancestry_analysis
#45
smlmbrt
closed
1 year ago
0
Refactor downloads to be more robust
#44
nebfield
closed
1 year ago
2
Ancestry Script
#43
smlmbrt
closed
1 year ago
0
Make the '.' variant valid
#42
ens-lgil
closed
1 year ago
0
Make the '.' variant valid
#41
ens-lgil
closed
1 year ago
3
Fix assertion errors
#40
smlmbrt
closed
1 year ago
0
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