PIFSCstockassessments ageproR issues

PIFSCstockassessments / ageproR

Prototype R package interface for AGEPRO (Age Structure Projection Model) using the JSON data format.

GNU General Public License v3.0

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Reference Points (REFPOINTS)

#58 efletcherPIFSC closed 6 days ago
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rename function optional_options -> optional_options_container

#57 efletcherPIFSC closed 1 month ago
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max bounds (BOUNDS)

#56 efletcherPIFSC closed 1 month ago
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output percentile report (PERC)

#55 efletcherPIFSC closed 2 months ago
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Validation/Error Statements before exporting to AGEPRO Input File.

#54 efletcherPIFSC opened 2 months ago
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aggepro_inp_model: Clean up AGEPRO Input File file Connection on.exit()

#53 efletcherPIFSC closed 2 months ago
1
AGEPRO output projection options (OUTPUT)

#52 efletcherPIFSC closed 2 months ago
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Order R6 methods as: public, active, private

#51 efletcherPIFSC closed 3 months ago
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Mortality Fraction prior to spawn (BIOLOGICAL)

#50 efletcherPIFSC closed 3 months ago
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set_recruit_model multi-recruit model validation

#49 efletcherPIFSC closed 3 months ago
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Unit Tests

#48 efletcherPIFSC opened 4 months ago
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process_error: Modularize projection_years to its own function from setup_parameter_tables

#47 efletcherPIFSC closed 3 months ago
1
recruitment probability default values per year proportional to the number of recruits

#46 efletcherPIFSC closed 4 months ago
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recruit_data: Recruitment Model classes to NAMESPACE

#45 efletcherPIFSC closed 4 months ago
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tibble::as_tibble.matrix deprecation warning (,name_repair)

#44 efletcherPIFSC closed 3 months ago
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AGEPRO Input File (*.INP) data import documentation

#43 efletcherPIFSC opened 5 months ago
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Fix 39 recruit prob

#42 efletcherPIFSC closed 5 months ago
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Refactor: proj_years factor check

#41 efletcherPIFSC closed 5 months ago
1
Harvest Scenario / Projection Analyses (PSTAR, REBUILDER)

#40 efletcherPIFSC closed 5 months ago
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`set_recruit_models` do not affect recruit probability and number of recruitment models

#39 efletcherPIFSC closed 5 months ago
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Refactor agepro keyword parameter setup to shared function

#38 efletcherPIFSC closed 6 months ago
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rename get_inplines

#37 efletcherPIFSC closed 3 months ago
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Option to verify to general options input when creating new agepro_model

#36 efletcherPIFSC closed 5 months ago
1
Refactor utils functions

#35 efletcherPIFSC closed 8 months ago
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Feat keyword name

#34 efletcherPIFSC closed 8 months ago
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process error stochastic keyword parameter

#33 efletcherPIFSC closed 9 months ago
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Process Error field names

#32 efletcherPIFSC closed 9 months ago
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Set variable names when there is checkmate assertions are used in class' active functions.

#31 efletcherPIFSC closed 9 months ago
1
Add case_id to json file

#30 efletcherPIFSC closed 5 months ago
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Empirical Recruitment JSON output

#29 efletcherPIFSC closed 9 months ago
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Stochastic Parameter Vignette

#28 efletcherPIFSC closed 10 months ago
1
cli Tweaks to `read_inp`

#27 efletcherPIFSC closed 11 months ago
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set_bootstrap_filename parameter hotfix

#26 efletcherPIFSC closed 11 months ago
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Implement writing AGEPRO Input Files (`write_inp`)

#25 efletcherPIFSC closed 11 months ago
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unlink file connection on exit

#24 efletcherPIFSC closed 5 months ago
1
Alternatives to roxygen @templates

#23 efletcherPIFSC closed 11 months ago
1
GENERAL options num_pop_sims(NSims) parameter order

#22 efletcherPIFSC closed 11 months ago
0
BOOTSTRAP keyword parameter

#21 efletcherPIFSC closed 1 year ago
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Invalid Bootstrap file path behavior

#20 efletcherPIFSC closed 1 year ago
1
ageproR functionality with AGEPRO calculation engine

#19 efletcherPIFSC opened 1 year ago
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Bootstrap JSON output

#18 efletcherPIFSC closed 1 year ago
0
Two Stage Empirical SSB Recruitment Model

#17 efletcherPIFSC closed 1 year ago
0
Two-Stage Empirical CDF of Recruitment (Model 15)

#16 efletcherPIFSC closed 1 year ago
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AGEPRO input file (*.inp): Reading CASEID, OPTIONS, and RECRUIT data

#15 efletcherPIFSC closed 1 year ago
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Mulit Recruitment Default Agepro Model

#14 efletcherPIFSC closed 1 year ago
1
Recruitment: redundant/ambiguous use of seq_yrs

#13 efletcherPIFSC closed 1 year ago
0
Reading AGEPRO INP Input File

#12 efletcherPIFSC opened 1 year ago
1
Replace output destination from tempdir to working directory

#11 efletcherPIFSC closed 9 months ago
1
AGEPRO keyword parameter format

#10 efletcherPIFSC closed 9 months ago
3
JSON input file format

#9 efletcherPIFSC opened 1 year ago
0