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PMBio
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MuDataSeurat
.h5mu files interface for Seurat
https://pmbio.github.io/MuDataSeurat/
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dgCMatrix
#19
maallen3
opened
3 months ago
0
Error in WriteH5ADHelper(object, assay, h5, global = TRUE): no slot of name "meta.features" for this object of class "Assay5"
#18
FlowerPurr
opened
7 months ago
0
Empty tables and nullable
#17
gtca
opened
10 months ago
3
Error occurred when convert Seurat v5 object to h5ad file
#16
maxbond233
closed
8 months ago
2
The anndata package expects 'anndata', not 'AnnData' as encoding-type
#15
vals
closed
11 months ago
1
HDF5-API Errors: error #000: H5D.c in H5Dvlen_reclaim(): line 732: invalid argument
#14
rosanababu
opened
1 year ago
4
Actions fail due to issues with pkgdown
#13
gtca
closed
11 months ago
0
Actions fail because of SeuratData
#12
gtca
closed
11 months ago
1
Allow reading files with the duplicated feature names across modalities
#11
gtca
closed
2 years ago
1
I've tested the patch but I still see the same error. Strangely, the error disappears upon forcing my ADT matrix to a sparse matrix using `Seurat::as.sparse`. Now I can load my `mudata` file.
#10
bio-la
opened
2 years ago
5
can't read mudata created with muon (python)
#9
bio-la
closed
11 months ago
8
WriteH5MU fails
#8
bio-la
opened
2 years ago
4
WriteH5MU fails with NULL as varm_key after running Seurat workflow
#7
fhausmann
closed
2 years ago
4
String categories written by MuDataSeurat are read in as bytes by anndata
#6
ivirshup
closed
2 years ago
0
Null categorical codes written incorrectly
#5
ivirshup
closed
2 years ago
0
Remote install fails
#4
fhausmann
closed
2 years ago
0
Columns of type characters converted into byte string
#3
mdmanurung
closed
2 years ago
0
`mu.read` ValueError
#2
mdmanurung
closed
2 years ago
2
invalid class “DimReduc” object
#1
gjhuizing
closed
2 years ago
7