PMCC-BioinformaticsCore janis-core issues

PMCC-BioinformaticsCore / janis-core

Core python modules for Janis Pipeline workflow assistant

GNU General Public License v3.0

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issues

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Test add cwl-utils implementation

#21 illusional closed 4 years ago
2
Produce a BashTool

#20 illusional opened 4 years ago
0
Workflows with different tool versions are not exported correctly

#19 illusional closed 4 years ago
1
Inputvalue coercion

#18 illusional closed 4 years ago
0
potential watch improvement

#17 drtconway closed 4 years ago
1
Int<->Str typing issue.

#16 drtconway closed 4 years ago
1
Allow a container to be overriden within the `translate` method

#15 illusional closed 4 years ago
3
Remove 'template' from PythonTool illegal keyword list

#14 illusional closed 4 years ago
0
Outputs of type "Directory" to not get copied/moved to the output directory.

#13 drtconway closed 4 years ago
3
Refactor codetool to use JSON input

#12 illusional opened 4 years ago
0
Escaping

#11 drtconway closed 4 years ago
3
Expressions in Janis

#10 illusional closed 4 years ago
10
PythonTool does not handle an argument called "template" correctly.

#9 drtconway closed 4 years ago
0
Allow empty containers by flag

#8 illusional closed 4 years ago
2
Add shebang to CWL export

#7 illusional closed 4 years ago
0
add cwl-runner shebang when translating tools

#6 matthdsm closed 4 years ago
2
Conditionals in Janis

#5 illusional closed 4 years ago
4
Replace pkg_resources with importlib_metadata

#4 illusional closed 4 years ago
3
Add CommandToolBuilder

#3 illusional closed 4 years ago
1
Adds scattering by multiple fields for WDL and Cromwell

#2 illusional closed 5 years ago
1
WIP: Api review

#1 illusional closed 5 years ago
2