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PavlidisLab
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gemma.R
An R wrapper for the Gemma RESTful API
https://pavlidislab.github.io/gemma.R/
Apache License 2.0
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Empty contrasts and how to return them
#57
oganm
opened
4 months ago
0
Hide taxon specific gene accepting endpoints inside the non-taxon specific ones
#56
oganm
opened
4 months ago
0
Processing of result sets is unreliable at the edges of limits.
#55
oganm
closed
4 months ago
0
Compression support to new fields
#54
oganm
opened
5 months ago
0
Compression of compressible input fields
#53
oganm
closed
5 months ago
2
get_dataset_expresison_for_genes fails when no genes present
#52
oganm
closed
6 months ago
0
Changes since 3.19
#51
oganm
closed
5 months ago
0
Multiple baseline problem
#50
oganm
closed
6 months ago
1
Checking all changes
#49
oganm
closed
6 months ago
0
Documentation refinements
#48
oganm
closed
6 months ago
0
Datasets without any metadata fail when using get_dataset_object and make_design
#47
oganm
opened
10 months ago
0
experimentalFactors category and baselineGroup category
#46
oganm
opened
1 year ago
0
get_dataset_object fails to make design files
#45
oganm
closed
1 year ago
0
Streamline searching
#44
oganm
closed
1 year ago
1
Incomplete support for measurements
#43
oganm
opened
1 year ago
0
Catchup to gemma 1.3
#42
oganm
closed
8 months ago
1
Add a user agent
#41
arteymix
closed
1 year ago
0
metaanalysis
#40
oganm
closed
1 year ago
0
Current dev
#39
oganm
closed
2 years ago
0
Bioconductor release checklist
#38
oganm
closed
2 years ago
3
Multifactor experiments fail to return proper contrasts with get_dataset_differential_expression_analyses
#37
oganm
closed
2 years ago
0
Geeq cases changed in development version of the API
#36
oganm
closed
2 years ago
1
Finalize Documentation
#35
oganm
closed
2 years ago
1
Memory caching
#34
oganm
closed
2 years ago
1
Zero length processed result defaults
#33
oganm
opened
2 years ago
0
Openapi
#32
oganm
closed
1 year ago
0
Automatic regeneration of missing annotation files
#31
oganm
closed
2 years ago
1
Post review edits
#30
oganm
closed
2 years ago
6
Registry fix
#29
oganm
closed
2 years ago
0
passing tests and minor fix
#28
oganm
closed
2 years ago
0
Processing functions have no tolerance for missing fields
#27
oganm
closed
2 years ago
1
Sporadic test failures
#26
oganm
closed
2 years ago
5
Registry enforces argument defaults and creates documentation errors
#25
oganm
closed
2 years ago
4
High level memo
#24
oganm
closed
2 years ago
0
High level functions don't have memoisation
#23
oganm
closed
2 years ago
1
Include development Gemma in the CI build matrix
#22
arteymix
opened
2 years ago
4
persistent caching with memoise
#21
oganm
closed
2 years ago
0
GeneSymbol, GeneName, GemmaId and NcbiId are not guaranteed to exist for getDatasetExpression endpoint
#20
arteymix
closed
2 years ago
1
Add support for ISO 8601 date format
#19
arteymix
closed
2 years ago
0
Standardizing date to ISO 8601
#18
arteymix
closed
2 years ago
1
Create package-level documentation page
#17
yavyx
closed
2 years ago
1
Differences in Web Interface vs R Wrapper, general usage questions
#16
fratajcz
closed
2 years ago
1
Wrapper for pretty ResultSet access and printing
#15
yavyx
closed
2 years ago
0
Adding short descriptions to getDatasetResultSets()
#14
yavyx
closed
2 years ago
0
Better error messages for bad responses
#13
yavyx
closed
3 years ago
0
Bioconductor wip
#12
yavyx
closed
3 years ago
1
Embedding async
#11
jsicherman
closed
3 years ago
2
Bioconductor?
#10
jsicherman
closed
3 years ago
3
Numerical inputs to getGenes
#9
yavyx
closed
3 years ago
1
Documentation issues
#8
yavyx
closed
2 years ago
1
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